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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0730400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 36.2 (3.96) R2 : 0.173
β1 : -142 (16.9) R2dD : 2220 R2D : -4310
β2 : -- (--) R2dC : -- R2C : --
β3 : 7610 (904) R2dE : 466000 R2E : -468000
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -32500 (3860) R2dD*E : 466000 R2D*E : -464000
γ1 : -0.161 (0.0761) R2dN8 : 0.0109 R2N8 : -2070
σ : 0.666
deviance : 204.71
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 80
memory length : 270
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0123
open length of G : 0.993

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
204.32 0.672 36.2 -142 0.079 7610 0.0411 -32500 -0.16 10.8 80 272 0.000184 0.995
55865432.92 348 -13.1 -48.6 51.7 7510 249 -- 10.8 15.8 75.46 10 2.02 5.81
204.33 0.666 36.2 -142 0.0788 7610 -- -32500 -0.16 10.8 80 272 0.000174 0.995
46450362.49 317 2.19 458 209 6550 -- -- 94 18.7 72.91 135 0.804 6.98
204.71 0.666 36.2 -142 -- 7610 -- -32500 -0.161 -- 80 270 0.0123 0.993
236.1 0.72 2.88 0.52 0.0365 -- -0.114 -- -0.17 9.96 -- -- -- --
236.15 0.72 2.88 0.515 0.037 -- -- -- -0.171 9.96 -- -- -- --
236.09 0.719 2.89 0.518 -- -0.381 -- -- -0.171 -- 75.78 123 0.277 1.7
243.07 0.73 2.9 -- 0.0389 -0.283 -- -- -0.229 8.82 70.02 60 1.78 7.25
236.23 0.718 2.89 0.515 -- -- -- -- -0.171 -- -- -- -- --
243.15 0.729 2.9 -- 0.0366 -- -- -- -0.228 8.9 -- -- -- --
242.12 0.727 2.9 -- -- -0.579 -- -- -0.23 -- 86.08 13 1.01 7.13
243.23 0.728 2.9 -- -- -- -- -- -0.228 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 204.33 humidity 80.0 270 < th dose independent rect. 24 1
2 204.33 humidity 80.0 10 < th dose independent rect. 24 4
6 204.33 humidity 80.0 270 < th dose dependent rect. 24 1
7 204.34 humidity 80.0 10 < th dose dependent rect. 24 4
12 204.46 humidity 80.0 10 < th dose independent rect. 24 2
17 204.46 humidity 80.0 10 < th dose dependent rect. 24 2
56 216.91 wind 1.0 10 < th dose independent rect. 15 7
57 216.98 wind 1.0 10 < th dose independent rect. 17 5
59 216.99 wind 1.0 10 < th dose dependent rect. 15 7
60 217.02 wind 1.0 10 < th dose dependent rect. 17 5
62 217.04 wind 1.0 10 < th dose independent rect. 21 1
66 217.04 wind 1.0 10 < th dose dependent rect. 21 1
80 220.55 temperature 20.0 10 < th dose dependent rect. 24 5
85 220.88 radiation 10.0 1440 > th dose independent rect. 5 1
97 220.88 radiation 10.0 1440 > th dose dependent rect. 5 1
135 221.19 radiation 30.0 270 > th dose dependent rect. 7 1
195 223.20 wind 3.0 1440 < th dose independent rect. 15 2
196 223.28 wind 3.0 90 < th dose dependent rect. 19 1
199 223.29 wind 1.0 1440 < th dose dependent rect. 19 1
205 223.59 wind 3.0 1440 > th dose independent rect. 15 2
213 223.74 wind 3.0 1440 < th dose dependent rect. 15 2
214 223.78 atmosphere 1005.0 10 > th dose independent rect. 18 10
216 223.83 wind 3.0 90 < th dose independent rect. 18 3
221 224.01 temperature 20.0 270 < th dose independent rect. 20 7
237 224.46 temperature 20.0 90 < th dose independent rect. 23 5
248 224.65 wind 3.0 1440 < th dose independent rect. 14 6
263 224.83 temperature 20.0 10 < th dose independent rect. 24 4
265 224.85 wind 5.0 4320 < th dose independent rect. 22 1
283 225.08 wind 5.0 90 > th dose independent rect. 22 1
286 225.13 radiation 30.0 90 > th dose independent rect. 8 1
290 225.14 wind 3.0 1440 > th dose independent rect. 14 6
292 225.16 wind 5.0 4320 > th dose independent rect. 22 1
299 225.31 wind 5.0 4320 > th dose independent rect. 20 5
300 225.35 wind 5.0 4320 < th dose independent rect. 20 5
323 225.45 wind 5.0 4320 > th dose dependent rect. 21 4
326 225.49 temperature 20.0 10 > th dose independent rect. 23 10
366 225.71 wind 7.0 270 > th dose dependent rect. 20 1
367 225.71 humidity 50.0 1440 < th dose dependent rect. 11 2
426 225.94 precipitation 0.1 14400 > th dose independent rect. 20 3
427 225.97 wind 3.0 1440 < th dose dependent rect. 14 6
430 226.00 precipitation 0.1 14400 < th dose independent rect. 20 3
431 226.00 precipitation 0.1 14400 < th dose dependent rect. 20 3
434 226.02 precipitation 0.1 14400 > th dose independent rect. 20 1
448 226.18 precipitation 0.1 14400 < th dose independent rect. 20 1
450 226.18 precipitation 0.1 14400 < th dose dependent rect. 20 1
457 226.22 radiation 40.0 90 > th dose independent rect. 12 22
464 226.30 wind 7.0 270 > th dose independent rect. 20 1
559 226.68 temperature 20.0 270 < th dose independent sin 16 NA
560 226.68 temperature 20.0 90 < th dose independent rect. 1 3
563 226.71 temperature 20.0 10 < th dose dependent sin 7 NA
564 226.71 precipitation 0.1 14400 > th dose dependent rect. 21 2
596 226.91 wind 1.0 1440 < th dose independent rect. 19 1
597 226.91 precipitation 0.1 90 > th dose independent rect. 1 2
598 226.91 precipitation 0.1 90 > th dose dependent rect. 1 2
605 226.95 temperature 20.0 270 < th dose dependent rect. 1 1
611 227.00 precipitation 0.1 10 > th dose independent rect. 1 1
626 227.00 precipitation 0.1 10 > th dose dependent rect. 1 1
638 227.01 radiation 30.0 90 > th dose independent sin 11 NA
679 227.11 radiation 30.0 90 < th dose independent sin 11 NA
700 227.20 temperature 20.0 270 > th dose independent sin 16 NA
729 227.34 temperature 20.0 10 < th dose independent rect. 2 1
736 227.36 precipitation 0.1 10 > th dose independent rect. 21 5
741 227.36 precipitation 0.1 10 > th dose dependent rect. 21 5
756 227.42 temperature 30.0 10 < th dose dependent rect. 18 10
794 227.56 wind 1.0 10 < th dose dependent rect. 24 3
879 227.82 wind 5.0 270 > th dose independent rect. 20 3
880 227.82 wind 1.0 1440 > th dose dependent rect. 15 1
882 227.82 atmosphere 995.0 10 > th dose dependent rect. 18 10
917 227.89 temperature 20.0 270 < th dose dependent rect. 19 8
918 227.91 temperature 20.0 720 > th dose independent rect. 20 2
927 227.93 wind 3.0 90 > th dose dependent rect. 22 1
931 227.95 wind 3.0 10 > th dose independent rect. 24 1
953 227.99 humidity 50.0 1440 < th dose independent rect. 13 1
990 228.05 temperature 15.0 10 > th dose dependent rect. 22 11