Os01g0730300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD-superfamily hydrolase subfamily IIB protein.
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Os01g0730300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD-superfamily hydrolase subfamily IIB protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.02 | 0.24 | 11.7 | 0.756 | 0.643 | 0.252 | -0.227 | -0.679 | -0.104 | 21.5 | 21.06 | 962 | -- | -- |
| 26.83 | 0.241 | 11.6 | 0.836 | 0.654 | 0.366 | -0.442 | -- | -0.085 | 21.5 | 20.6 | 2502 | -- | -- |
| 26.16 | 0.238 | 11.7 | 0.737 | 0.642 | 0.247 | -- | -0.769 | -0.113 | 21.5 | 21.24 | 960 | -- | -- |
| 27.43 | 0.244 | 11.6 | 0.851 | 0.659 | 0.393 | -- | -- | -0.0869 | 21.5 | 20.3 | 2452 | -- | -- |
| 48.65 | 0.325 | 11.6 | 0.711 | -- | 0.436 | -- | -0.663 | -0.157 | -- | 21.4 | 778 | -- | -- |
| 29.97 | 0.257 | 11.6 | 1.03 | 0.679 | -- | -0.425 | -- | 0.00953 | 21.7 | -- | -- | -- | -- |
| 30.65 | 0.259 | 11.6 | 1.05 | 0.681 | -- | -- | -- | 0.0104 | 21.6 | -- | -- | -- | -- |
| 49.9 | 0.329 | 11.6 | 0.876 | -- | 0.474 | -- | -- | -0.12 | -- | 21.4 | 783 | -- | -- |
| 30.97 | 0.259 | 11.7 | -- | 0.675 | 0.899 | -- | -- | -0.283 | 21.6 | 16.91 | 47520 | -- | -- |
| 58.13 | 0.356 | 11.6 | 1.05 | -- | -- | -- | -- | 0.00914 | -- | -- | -- | -- | -- |
| 59.46 | 0.361 | 11.6 | -- | 0.683 | -- | -- | -- | -0.106 | 21.8 | -- | -- | -- | -- |
| 57.9 | 0.354 | 11.7 | -- | -- | 0.915 | -- | -- | -0.289 | -- | 17.03 | 47520 | -- | -- |
| 87.28 | 0.436 | 11.6 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 5 | 23.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 7 | 23.99 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 17 | 24.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 6 |
| 46 | 24.25 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 91 | 24.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 118 | 24.54 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 123 | 24.56 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 129 | 24.59 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 146 | 24.65 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 147 | 24.65 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 11 |
| 174 | 24.71 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 12 |
| 180 | 24.73 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 6 |
| 189 | 24.74 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 6 |
| 197 | 24.75 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 10 |
| 234 | 24.82 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 254 | 24.85 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 347 | 25.01 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 376 | 25.05 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 408 | 25.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 761 | 25.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 854 | 25.67 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |