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Os01g0730200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat 2 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.25 (0.0233) R2 : 0.571
β1 : 1.96 (0.0853) R2dD : 0.518 R2D : 0.359
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.644 (0.0497) R2dN8 : 0.212 R2N8 : 0.053
σ : 0.437
deviance : 87.43
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_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
70.67 0.395 9.21 2.08 0.153 -0.636 0.0951 0.0722 0.803 5.09 11.76 1405 -- --
70.68 0.392 9.21 2.08 0.153 -0.637 0.0963 -- 0.803 5.04 11.7 1404 -- --
70.69 0.392 9.21 2.08 0.153 -0.635 -- 0.0781 0.803 5.12 11.67 1404 -- --
70.7 0.392 9.21 2.07 0.154 -0.632 -- -- 0.799 5.11 11.58 1404 -- --
71.93 0.395 9.21 2.09 -- -0.628 -- 0.103 0.809 -- 11.44 1404 -- --
86.47 0.436 9.25 1.96 0.135 -- 0.0566 -- 0.641 6.95 -- -- -- --
86.48 0.435 9.25 1.96 0.135 -- -- -- 0.641 6.92 -- -- -- --
71.94 0.395 9.22 2.08 -- -0.62 -- -- 0.8 -- 11.51 1406 -- --
112.59 0.494 9.33 -- 0.154 -1.5 -- -- 0.296 5.97 55.77 23689 -- --
87.43 0.437 9.25 1.96 -- -- -- -- 0.644 -- -- -- -- --
187.72 0.641 9.3 -- 0.161 -- -- -- 0.423 6.16 -- -- -- --
113.22 0.496 9.33 -- -- -1.5 -- -- 0.287 -- 55.78 23740 -- --
189.06 0.642 9.3 -- -- -- -- -- 0.426 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.62 precipitation 1e-01 43200 > th dose dependent rect. 14 10
2 66.67 precipitation 1e-01 43200 > th dose dependent rect. 11 7
4 66.73 precipitation 1e-01 43200 > th dose independent rect. 14 4
5 66.73 precipitation 1e-01 43200 < th dose independent rect. 14 4
6 66.73 precipitation 1e-01 43200 < th dose dependent rect. 14 4
19 66.90 precipitation 1e-01 43200 > th dose dependent rect. 17 8
24 66.96 precipitation 1e-01 43200 > th dose dependent rect. 14 5
39 67.11 precipitation 1e-01 43200 > th dose dependent sin 18 NA
71 67.29 precipitation 1e-01 43200 > th dose independent rect. 15 6
72 67.29 precipitation 1e-01 43200 < th dose independent rect. 15 6
73 67.29 precipitation 1e-01 43200 < th dose dependent rect. 15 6
88 67.39 precipitation 1e-01 43200 < th dose independent rect. 17 7
90 67.39 precipitation 1e-01 43200 < th dose dependent rect. 17 7
92 67.40 precipitation 1e-01 43200 > th dose dependent rect. 19 5
93 67.41 precipitation 1e-01 43200 > th dose independent rect. 17 7
100 67.48 precipitation 1e-01 43200 > th dose independent rect. 17 5
223 68.09 precipitation 1e-01 43200 < th dose independent rect. 19 5
224 68.09 precipitation 1e-01 43200 < th dose dependent rect. 19 5
225 68.10 precipitation 1e-01 43200 > th dose independent rect. 19 5
253 68.37 precipitation 1e-01 43200 > th dose independent rect. 19 3
263 68.41 precipitation 1e-01 43200 < th dose independent rect. 19 3
266 68.41 precipitation 1e-01 43200 < th dose dependent rect. 19 3
298 68.60 wind 5e+00 43200 > th dose independent rect. 21 1
304 68.63 radiation 1e+01 43200 > th dose independent rect. 8 3
316 68.67 wind 5e+00 43200 < th dose independent rect. 21 1
327 68.71 precipitation 1e-01 43200 > th dose independent sin 19 NA
328 68.71 precipitation 1e-01 43200 < th dose independent sin 19 NA
329 68.71 precipitation 1e-01 43200 < th dose dependent sin 19 NA
404 68.89 precipitation 1e-01 43200 > th dose dependent rect. 15 2
464 69.14 wind 5e+00 43200 > th dose independent rect. 8 2
479 69.21 precipitation 1e-01 43200 > th dose independent rect. 20 1
484 69.24 wind 5e+00 43200 < th dose independent rect. 8 2
517 69.39 precipitation 1e-01 43200 < th dose independent rect. 20 1
521 69.39 precipitation 1e-01 43200 < th dose dependent rect. 20 1
530 69.44 wind 1e+00 43200 < th dose dependent rect. 3 7
551 69.53 radiation 4e+01 1440 < th dose dependent rect. 9 3
558 69.54 wind 5e+00 43200 > th dose dependent rect. 21 1
560 69.55 radiation 4e+01 14400 > th dose independent rect. 13 1
584 69.66 wind 1e+00 43200 < th dose dependent rect. 17 1
585 69.66 radiation 1e+01 1440 > th dose dependent rect. 9 3
590 69.68 wind 1e+00 43200 < th dose dependent rect. 5 1
597 69.72 wind 1e+00 43200 < th dose independent rect. 5 1
627 69.82 radiation 2e+01 4320 > th dose independent rect. 6 4
650 69.85 radiation 3e+01 1440 < th dose independent rect. 9 2
656 69.87 wind 1e+00 43200 < th dose dependent rect. 3 4
707 70.03 wind 1e+00 43200 < th dose independent rect. 3 7
719 70.06 atmosphere 1e+03 43200 < th dose dependent rect. 23 1
730 70.09 radiation 2e+01 1440 > th dose independent rect. 9 2
746 70.11 radiation 2e+01 4320 > th dose independent sin 11 NA
750 70.11 wind 3e+00 43200 > th dose dependent rect. 7 3
758 70.12 radiation 1e+01 1440 > th dose dependent rect. 15 21
759 70.13 wind 5e+00 43200 > th dose dependent rect. 20 3
761 70.14 wind 1e+00 43200 > th dose independent rect. 3 6
765 70.18 wind 1e+00 43200 > th dose independent rect. 16 8
771 70.19 radiation 4e+01 14400 < th dose independent rect. 13 1
784 70.23 wind 1e+00 43200 < th dose independent rect. 1 8
788 70.24 radiation 3e+01 1440 < th dose independent rect. 15 21
792 70.26 wind 5e+00 43200 > th dose independent rect. 18 17
806 70.30 wind 5e+00 43200 < th dose independent rect. 19 16
823 70.35 wind 7e+00 43200 < th dose independent rect. 20 4
828 70.36 wind 1e+00 43200 < th dose dependent rect. 1 6
846 70.40 wind 1e+00 43200 < th dose independent rect. 3 4
853 70.42 radiation 4e+01 14400 > th dose independent rect. 12 20
893 70.47 radiation 1e+01 4320 > th dose dependent rect. 16 16
906 70.49 radiation 2e+01 1440 > th dose independent rect. 15 21
908 70.50 radiation 1e+01 14400 < th dose independent rect. 9 1
925 70.50 radiation 2e+01 1440 < th dose independent rect. 15 23
946 70.51 radiation 2e+01 4320 < th dose independent rect. 15 18
956 70.52 radiation 4e+01 14400 > th dose dependent rect. 13 1
991 70.55 precipitation 1e-01 43200 < th dose independent rect. 22 1
996 70.55 precipitation 1e-01 43200 < th dose dependent rect. 22 1
999 70.55 wind 7e+00 43200 > th dose dependent rect. 20 8