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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0730100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0243) R2 : 0.00336
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0634 (0.0511) R2dN8 : 0.00434 R2N8 : 0.00336
σ : 0.457
deviance : 95.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.65 0.409 3.44 0.503 0.217 0.334 -0.028 1.87 -0.0148 10.1 30.98 252 -- --
80.16 0.417 3.45 0.442 0.227 0.323 0.514 -- -0.0434 10.8 32.83 180 -- --
75.62 0.405 3.44 0.498 0.212 0.329 -- 1.8 -0.0157 10.3 31.07 238 -- --
80.95 0.419 3.44 0.495 0.257 0.337 -- -- -0.0299 9.68 30.59 510 -- --
77.4 0.41 3.46 0.473 -- 0.442 -- 1.58 -0.0272 -- 31 178 -- --
81.09 0.422 3.45 0.492 0.3 -- 0.756 -- -0.00533 12.8 -- -- -- --
83.3 0.427 3.44 0.519 0.302 -- -- -- -0.00268 12 -- -- -- --
82.82 0.424 3.46 0.482 -- 0.446 -- -- -0.0433 -- 30.46 177 -- --
86.64 0.434 3.45 -- 0.317 0.416 -- -- -0.0819 9.6 30 538 -- --
89.05 0.441 3.45 0.509 -- -- -- -- -0.00687 -- -- -- -- --
90.39 0.445 3.46 -- 0.296 -- -- -- -0.0604 11.9 -- -- -- --
89.1 0.44 3.46 -- -- 0.474 -- -- -0.0864 -- 30.39 178 -- --
95.89 0.457 3.46 -- -- -- -- -- -0.0634 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.12 precipitation 0.1 10 < th dose independent rect. 3 23
2 73.12 precipitation 0.1 10 < th dose dependent rect. 3 23
3 73.14 atmosphere 1000.0 30 > th dose independent rect. 3 23
6 74.00 atmosphere 1005.0 10 > th dose dependent rect. 2 2
8 74.29 humidity 60.0 30 > th dose dependent rect. 3 23
10 74.56 temperature 30.0 270 < th dose independent rect. 9 23
15 74.72 radiation 30.0 720 < th dose independent rect. 17 17
18 74.89 wind 1.0 14400 < th dose dependent rect. 2 1
19 74.89 radiation 40.0 90 < th dose dependent rect. 3 23
26 75.15 radiation 30.0 720 > th dose independent rect. 15 20
34 75.26 wind 9.0 4320 < th dose independent rect. 3 1
39 75.31 wind 1.0 14400 > th dose independent rect. 2 1
42 75.35 wind 1.0 14400 < th dose independent rect. 2 1
45 75.39 atmosphere 1000.0 270 > th dose independent sin 1 NA
47 75.40 radiation 30.0 720 > th dose independent rect. 9 2
49 75.42 radiation 30.0 90 < th dose independent rect. 3 11
50 75.44 precipitation 0.1 10 < th dose independent sin 6 NA
51 75.44 precipitation 0.1 10 < th dose dependent sin 6 NA
56 75.46 temperature 30.0 270 < th dose independent rect. 2 15
57 75.47 temperature 25.0 90 > th dose independent rect. 1 1
59 75.47 radiation 30.0 270 < th dose independent rect. 9 22
88 75.54 temperature 30.0 90 < th dose independent rect. 3 22
100 75.63 radiation 30.0 720 < th dose independent rect. 2 8
101 75.63 temperature 25.0 90 > th dose dependent rect. 1 2
103 75.64 radiation 30.0 270 < th dose independent sin 6 NA
105 75.65 radiation 10.0 30 < th dose independent rect. 4 22
110 75.67 radiation 30.0 720 < th dose independent sin 10 NA
133 75.69 atmosphere 1000.0 90 > th dose independent sin 23 NA
135 75.69 temperature 20.0 720 > th dose independent rect. 7 8
139 75.71 radiation 30.0 90 < th dose independent rect. 3 22
142 75.74 radiation 30.0 720 > th dose independent sin 10 NA
150 75.75 wind 3.0 90 < th dose independent rect. 2 1
151 75.75 atmosphere 1005.0 30 > th dose independent rect. 4 15
154 75.76 atmosphere 1000.0 270 < th dose independent rect. 7 9
156 75.77 temperature 30.0 270 < th dose independent rect. 22 23
157 75.77 atmosphere 1010.0 30 < th dose dependent rect. 2 1
184 75.86 radiation 30.0 720 < th dose independent rect. 21 14
190 75.89 temperature 30.0 270 < th dose independent sin 4 NA
193 75.90 atmosphere 1005.0 90 > th dose independent rect. 2 1
198 75.92 atmosphere 1000.0 90 < th dose independent rect. 7 19
199 75.92 radiation 30.0 90 < th dose independent rect. 17 22
204 75.93 wind 5.0 90 < th dose dependent rect. 2 1
207 75.94 temperature 30.0 720 < th dose independent sin 7 NA
219 75.96 wind 1.0 30 > th dose independent rect. 2 1
222 75.96 temperature 10.0 30 > th dose independent rect. 2 1
224 75.96 temperature 30.0 30 < th dose independent rect. 2 1
225 75.96 humidity 50.0 30 > th dose independent rect. 2 1
228 75.96 atmosphere 995.0 30 > th dose independent rect. 2 1
229 75.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
231 75.96 radiation 1.0 30 < th dose independent rect. 2 1
236 75.96 precipitation 0.1 30 < th dose independent rect. 2 1
237 75.96 temperature 10.0 30 > th dose independent rect. 3 23
241 75.96 temperature 10.0 30 > th dose dependent rect. 2 1
244 75.96 radiation 1.0 30 < th dose dependent rect. 2 1
249 75.96 precipitation 0.1 30 < th dose dependent rect. 2 1
251 75.97 humidity 90.0 30 > th dose independent rect. 2 1
254 75.97 humidity 50.0 30 > th dose dependent rect. 2 1
258 75.97 radiation 1.0 4320 < th dose dependent rect. 3 1
259 75.97 atmosphere 995.0 10 > th dose dependent rect. 4 22
266 75.98 temperature 30.0 30 < th dose dependent rect. 2 1
270 75.99 radiation 30.0 270 > th dose independent sin 3 NA
278 75.99 atmosphere 1015.0 90 < th dose dependent rect. 7 10
281 76.00 temperature 10.0 1440 > th dose independent rect. 3 1
284 76.00 temperature 30.0 1440 < th dose independent rect. 3 1
289 76.00 humidity 50.0 1440 > th dose independent rect. 3 1
298 76.00 atmosphere 995.0 1440 > th dose independent rect. 3 1
299 76.00 radiation 1.0 1440 < th dose independent rect. 3 1
322 76.00 temperature 10.0 1440 > th dose independent rect. 4 23
347 76.02 wind 3.0 720 < th dose dependent rect. 5 4
384 76.04 atmosphere 1015.0 90 < th dose dependent rect. 9 8
389 76.05 radiation 30.0 270 < th dose independent rect. 20 23
392 76.06 radiation 30.0 270 > th dose independent rect. 8 8
413 76.06 humidity 60.0 30 > th dose dependent rect. 16 23
415 76.07 radiation 30.0 270 > th dose independent no NA NA
540 76.08 humidity 50.0 30 > th dose independent rect. 3 23
547 76.09 radiation 30.0 270 < th dose independent rect. 12 23
571 76.15 humidity 70.0 10 > th dose independent rect. 4 22
574 76.16 temperature 30.0 90 > th dose independent rect. 9 8
629 76.22 radiation 30.0 270 < th dose independent rect. 14 23
682 76.25 radiation 40.0 270 < th dose dependent rect. 20 23
683 76.26 temperature 30.0 720 > th dose independent sin 6 NA
684 76.26 wind 3.0 10 > th dose independent rect. 4 1
688 76.26 wind 3.0 10 > th dose dependent rect. 4 1
690 76.26 atmosphere 995.0 30 > th dose dependent rect. 4 15
719 76.28 precipitation 0.1 30 > th dose dependent rect. 23 6
723 76.29 atmosphere 1005.0 30 < th dose independent rect. 9 9
735 76.29 radiation 40.0 720 < th dose dependent rect. 17 17
736 76.29 radiation 40.0 90 < th dose dependent rect. 16 23
737 76.30 humidity 90.0 90 < th dose independent rect. 2 1
738 76.30 precipitation 0.1 10 > th dose independent rect. 23 6
765 76.31 atmosphere 1000.0 270 < th dose independent sin 0 NA
766 76.31 temperature 30.0 720 > th dose independent rect. 9 2
790 76.32 precipitation 0.1 10 > th dose independent rect. 3 1
803 76.32 precipitation 0.1 10 > th dose dependent rect. 3 1
813 76.32 humidity 60.0 30 > th dose dependent rect. 21 23
814 76.32 radiation 1.0 270 > th dose dependent rect. 13 23
815 76.33 radiation 30.0 270 < th dose independent no NA NA
821 76.34 precipitation 0.1 90 > th dose independent rect. 4 1
832 76.34 radiation 40.0 270 < th dose dependent sin 4 NA
833 76.34 precipitation 0.1 90 > th dose dependent rect. 4 1
840 76.35 humidity 90.0 90 < th dose independent rect. 1 16
878 76.37 temperature 30.0 270 > th dose independent sin 2 NA