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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0729700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0195) R2 : 0.00643
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0706 (0.0411) R2dN8 : 0.0083 R2N8 : 0.00643
σ : 0.367
deviance : 61.95
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.21 0.365 2.84 0.00114 0.0346 0.355 -0.0989 1.12 0.0772 13.5 1010 142 -- --
61.28 0.365 2.83 0.0429 0.0294 0.27 -0.113 -- 0.0863 13.4 1010 206 -- --
60.25 0.362 2.84 0.000245 0.0379 0.361 -- 1.15 0.078 13.9 1010 141 -- --
60.53 0.362 2.85 0.0436 0.018 0.29 -- -- 0.0178 20.3 1005 442 -- --
60.32 0.362 2.84 -0.00373 -- 0.359 -- 1.13 0.076 -- 1010 141 -- --
61.81 0.369 2.84 0.0315 0.0294 -- -0.126 -- 0.0747 13.3 -- -- -- --
61.87 0.368 2.84 0.0274 0.0325 -- -- -- 0.0743 14.7 -- -- -- --
60.56 0.362 2.85 0.042 -- 0.283 -- -- 0.0208 -- 1005 437 -- --
60.56 0.362 2.85 -- 0.0271 0.283 -- -- 0.0173 18.3 1005 433 -- --
61.93 0.368 2.84 0.026 -- -- -- -- 0.0734 -- -- -- -- --
61.89 0.368 2.84 -- 0.032 -- -- -- 0.0712 14.7 -- -- -- --
60.6 0.363 2.85 -- -- 0.279 -- -- 0.0169 -- 1005 436 -- --
61.95 0.367 2.84 -- -- -- -- -- 0.0706 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.05 temperature 20.0 30 > th dose dependent rect. 2 1
3 55.07 temperature 20.0 30 > th dose independent rect. 2 1
5 55.10 wind 5.0 30 < th dose dependent rect. 2 1
6 55.10 atmosphere 1005.0 30 > th dose dependent rect. 2 1
11 55.12 humidity 90.0 30 > th dose independent rect. 2 1
13 55.13 humidity 50.0 30 > th dose dependent rect. 2 1
16 55.14 wind 5.0 30 < th dose independent rect. 2 1
22 55.15 temperature 10.0 30 > th dose independent rect. 2 1
24 55.15 temperature 30.0 30 < th dose independent rect. 2 1
25 55.15 humidity 50.0 30 > th dose independent rect. 2 1
28 55.15 atmosphere 995.0 30 > th dose independent rect. 2 1
31 55.15 atmosphere 1010.0 30 < th dose independent rect. 2 1
33 55.15 radiation 1.0 30 < th dose independent rect. 2 1
38 55.15 precipitation 0.1 30 < th dose independent rect. 2 1
39 55.15 temperature 10.0 30 > th dose independent rect. 3 23
40 55.15 radiation 1.0 30 < th dose dependent rect. 2 1
45 55.15 precipitation 0.1 30 < th dose dependent rect. 2 1
49 55.30 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 55.49 temperature 30.0 30 < th dose dependent rect. 2 1
59 55.71 wind 1.0 30 > th dose independent rect. 2 1
102 57.13 wind 9.0 30 < th dose independent rect. 3 23
103 57.13 radiation 10.0 14400 < th dose dependent rect. 3 1
107 57.15 wind 9.0 1440 < th dose independent rect. 3 1
108 57.15 temperature 10.0 1440 > th dose independent rect. 3 1
111 57.15 temperature 30.0 1440 < th dose independent rect. 3 1
115 57.15 humidity 50.0 1440 > th dose independent rect. 3 1
124 57.15 atmosphere 995.0 1440 > th dose independent rect. 3 1
125 57.15 radiation 1.0 1440 < th dose independent rect. 3 1
145 57.15 temperature 10.0 1440 > th dose independent rect. 4 23
148 57.15 radiation 1.0 1440 < th dose dependent rect. 3 1
164 57.53 atmosphere 995.0 30 > th dose independent rect. 3 23
173 58.26 precipitation 0.1 30 < th dose independent rect. 3 23
174 58.26 precipitation 0.1 30 < th dose dependent rect. 3 23
183 58.65 precipitation 0.1 1440 > th dose independent rect. 9 4
184 58.65 precipitation 0.1 1440 > th dose dependent rect. 9 4
191 58.81 temperature 30.0 30 < th dose independent rect. 3 23
192 58.86 wind 1.0 1440 < th dose dependent rect. 17 1
194 58.93 wind 1.0 1440 < th dose independent rect. 17 1
195 58.98 precipitation 0.1 1440 > th dose independent rect. 12 1
197 58.98 precipitation 0.1 1440 > th dose dependent rect. 12 1
202 59.05 wind 1.0 1440 > th dose independent rect. 17 1
203 59.09 radiation 10.0 90 < th dose dependent rect. 10 2
213 59.33 temperature 25.0 90 < th dose dependent rect. 10 15
214 59.35 temperature 30.0 90 < th dose dependent rect. 10 17
218 59.38 radiation 1.0 4320 > th dose independent rect. 5 2
219 59.38 temperature 25.0 90 < th dose dependent rect. 22 3
231 59.39 temperature 25.0 270 < th dose dependent rect. 8 16
232 59.40 radiation 1.0 4320 < th dose independent rect. 5 2
234 59.41 radiation 1.0 4320 < th dose independent rect. 24 7
244 59.42 atmosphere 1005.0 90 > th dose dependent rect. 11 16
249 59.44 temperature 25.0 10 < th dose dependent rect. 24 1
269 59.49 temperature 25.0 270 > th dose independent rect. 23 4
280 59.53 temperature 30.0 270 < th dose dependent rect. 8 19
282 59.54 atmosphere 1005.0 270 > th dose dependent rect. 8 19
284 59.55 atmosphere 1005.0 270 > th dose dependent rect. 8 16
297 59.57 wind 7.0 90 > th dose independent rect. 18 1
307 59.59 atmosphere 1000.0 30 > th dose dependent rect. 11 13
321 59.61 temperature 10.0 30 > th dose dependent rect. 3 23
327 59.63 temperature 25.0 90 < th dose dependent rect. 16 9
333 59.64 radiation 1.0 90 > th dose dependent rect. 18 1
350 59.65 temperature 25.0 270 < th dose independent rect. 20 15
351 59.65 wind 7.0 90 > th dose dependent rect. 18 1
356 59.65 temperature 30.0 90 < th dose dependent rect. 22 14
374 59.68 temperature 25.0 1440 < th dose dependent rect. 8 1
376 59.68 radiation 1.0 4320 < th dose dependent rect. 24 7
385 59.69 radiation 1.0 4320 < th dose dependent rect. 5 2
395 59.70 radiation 10.0 4320 > th dose independent rect. 7 2
399 59.70 temperature 25.0 10 < th dose dependent rect. 17 8
416 59.72 atmosphere 1000.0 30 > th dose dependent rect. 23 1
476 59.75 wind 1.0 4320 < th dose dependent rect. 5 1
499 59.76 temperature 30.0 90 < th dose dependent rect. 22 20
509 59.78 wind 1.0 1440 > th dose independent rect. 3 1
510 59.78 temperature 25.0 4320 > th dose independent rect. 21 5
512 59.78 humidity 90.0 1440 > th dose dependent rect. 10 1
521 59.79 humidity 90.0 1440 > th dose independent rect. 10 1
522 59.79 radiation 10.0 90 < th dose independent rect. 11 1
524 59.79 temperature 25.0 270 < th dose independent rect. 20 5
525 59.79 atmosphere 1010.0 270 < th dose independent rect. 15 17
526 59.79 wind 7.0 90 > th dose dependent rect. 18 3
537 59.80 wind 3.0 4320 > th dose independent rect. 16 8
548 59.81 radiation 10.0 4320 < th dose independent rect. 8 1
550 59.81 wind 3.0 4320 < th dose independent rect. 17 6
551 59.81 wind 3.0 4320 < th dose independent rect. 16 8
552 59.81 atmosphere 1010.0 270 < th dose independent rect. 12 21
572 59.82 wind 3.0 4320 > th dose independent rect. 17 6
589 59.83 temperature 25.0 4320 > th dose independent rect. 22 1
590 59.83 atmosphere 1010.0 1440 < th dose independent rect. 13 1
611 59.84 wind 1.0 1440 > th dose independent rect. 11 1
612 59.84 wind 1.0 1440 < th dose independent rect. 11 1
613 59.84 temperature 25.0 4320 < th dose independent rect. 22 1
624 59.84 atmosphere 995.0 30 > th dose dependent rect. 23 16
629 59.85 temperature 20.0 10 < th dose independent rect. 23 1
671 59.86 wind 3.0 4320 > th dose independent sin 16 NA
678 59.86 wind 3.0 4320 > th dose independent rect. 15 12
681 59.86 atmosphere 1005.0 270 > th dose dependent sin 19 NA
683 59.86 radiation 20.0 4320 < th dose dependent rect. 8 1
702 59.87 precipitation 0.1 4320 > th dose independent rect. 6 1
703 59.87 temperature 25.0 4320 < th dose independent rect. 21 5
709 59.87 precipitation 0.1 4320 > th dose dependent rect. 6 1
723 59.88 precipitation 0.1 4320 < th dose independent rect. 6 1
729 59.88 precipitation 0.1 4320 < th dose dependent rect. 6 1
745 59.89 wind 3.0 4320 > th dose independent rect. 12 15
765 59.89 atmosphere 1000.0 30 > th dose dependent rect. 23 19
769 59.90 wind 3.0 4320 < th dose independent sin 16 NA
793 59.90 wind 1.0 1440 < th dose dependent rect. 8 4
807 59.91 wind 1.0 1440 < th dose independent rect. 8 4
812 59.91 wind 3.0 4320 < th dose independent rect. 14 13
844 59.92 wind 3.0 4320 < th dose independent rect. 15 11
847 59.92 wind 3.0 4320 < th dose independent rect. 12 15
851 59.92 wind 1.0 1440 < th dose dependent rect. 11 1
863 59.93 atmosphere 1010.0 270 < th dose independent rect. 12 10
872 59.93 wind 3.0 4320 < th dose dependent rect. 17 6
890 59.93 temperature 10.0 90 > th dose dependent rect. 24 23
893 59.94 wind 1.0 4320 < th dose independent rect. 5 1
921 59.95 atmosphere 1010.0 1440 > th dose independent rect. 12 1
922 59.95 wind 1.0 14400 > th dose independent rect. 21 2