Os01g0729400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, typical subtype containing protein.
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Os01g0729400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, typical subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.56 | 0.642 | 2.98 | 0.671 | 0.286 | -2.6 | -0.118 | 22.3 | -0.0228 | 11.4 | 30.54 | 27 | -- | -- |
| 191.19 | 0.649 | 3.05 | 0.0252 | 0.288 | -0.406 | -0.0633 | -- | -0.0181 | 11.2 | 34.8 | 57 | -- | -- |
| 186.57 | 0.636 | 2.98 | 0.655 | 0.286 | -2.69 | -- | 23.2 | -0.0209 | 11.3 | 30.72 | 26 | -- | -- |
| 191.01 | 0.644 | 3.05 | 0.0252 | 0.289 | -0.438 | -- | -- | -0.0179 | 11.2 | 34.98 | 60 | -- | -- |
| 191.49 | 0.644 | 2.98 | 0.654 | -- | -2.8 | -- | 25 | -0.0198 | -- | 30.89 | 26 | -- | -- |
| 191.36 | 0.649 | 3.05 | 0.0231 | 0.286 | -- | -0.0673 | -- | -0.0173 | 11.2 | -- | -- | -- | -- |
| 191.38 | 0.648 | 3.05 | 0.0202 | 0.286 | -- | -- | -- | -0.0176 | 11.2 | -- | -- | -- | -- |
| 196.19 | 0.655 | 3.05 | 0.00525 | -- | 0.201 | -- | -- | -0.0142 | -- | 30.89 | 26 | -- | -- |
| 191.03 | 0.644 | 3.05 | -- | 0.292 | -0.452 | -- | -- | -0.0203 | 11.2 | 34.97 | 59 | -- | -- |
| 196.49 | 0.655 | 3.06 | 0.0134 | -- | -- | -- | -- | -0.0201 | -- | -- | -- | -- | -- |
| 191.39 | 0.647 | 3.05 | -- | 0.286 | -- | -- | -- | -0.0199 | 11.2 | -- | -- | -- | -- |
| 195.87 | 0.652 | 3.05 | -- | -- | 0.351 | -- | -- | -0.014 | -- | 32.1 | 15 | -- | -- |
| 196.49 | 0.654 | 3.06 | -- | -- | -- | -- | -- | -0.0216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.19 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 11 | 1 |
| 14 | 173.96 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 2 |
| 18 | 174.45 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 10 | 1 |
| 19 | 174.66 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 7 |
| 36 | 174.94 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 11 | 1 |
| 53 | 176.03 | wind | 1 | 10 | < th | dose independent | rect. | 12 | 1 |
| 58 | 176.18 | wind | 1 | 10 | < th | dose independent | rect. | 12 | 3 |
| 85 | 179.00 | temperature | 30 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 86 | 179.69 | wind | 9 | 90 | > th | dose independent | rect. | 13 | 2 |
| 87 | 179.70 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 1 |
| 99 | 179.70 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 130 | 180.93 | radiation | 20 | 90 | > th | dose independent | rect. | 6 | 1 |
| 144 | 180.93 | radiation | 20 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 159 | 181.09 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 18 |
| 184 | 181.67 | humidity | 80 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 199 | 182.05 | wind | 1 | 10 | < th | dose independent | rect. | 7 | 7 |
| 200 | 182.13 | wind | 5 | 90 | > th | dose independent | rect. | 6 | 1 |
| 201 | 182.13 | wind | 5 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 233 | 182.65 | humidity | 80 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 235 | 182.66 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 8 | 4 |
| 237 | 182.68 | wind | 1 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 238 | 182.71 | wind | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 240 | 182.73 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 1 |
| 256 | 182.77 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 279 | 182.85 | wind | 1 | 10 | < th | dose independent | sin | 20 | NA |
| 289 | 182.98 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 292 | 183.03 | humidity | 70 | 270 | > th | dose dependent | rect. | 5 | 5 |
| 307 | 183.18 | wind | 1 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 316 | 183.27 | radiation | 40 | 10 | < th | dose independent | sin | 13 | NA |
| 317 | 183.27 | humidity | 70 | 270 | > th | dose independent | rect. | 22 | 12 |
| 319 | 183.29 | humidity | 70 | 270 | > th | dose dependent | rect. | 6 | 3 |
| 320 | 183.29 | radiation | 20 | 270 | < th | dose dependent | rect. | 6 | 3 |
| 322 | 183.30 | radiation | 30 | 30 | > th | dose dependent | rect. | 13 | 21 |
| 324 | 183.37 | wind | 1 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 325 | 183.41 | wind | 1 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 338 | 183.57 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 1 |
| 341 | 183.58 | temperature | 30 | 90 | > th | dose dependent | sin | 9 | NA |
| 358 | 183.59 | radiation | 30 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 381 | 183.66 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 390 | 183.69 | wind | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 444 | 183.81 | humidity | 70 | 270 | < th | dose independent | sin | 8 | NA |
| 445 | 183.82 | humidity | 80 | 270 | > th | dose independent | rect. | 6 | 4 |
| 446 | 183.82 | radiation | 30 | 10 | > th | dose dependent | sin | 12 | NA |
| 451 | 183.87 | humidity | 70 | 270 | > th | dose independent | rect. | 5 | 6 |
| 457 | 183.91 | wind | 1 | 10 | > th | dose independent | sin | 20 | NA |
| 479 | 184.02 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 5 |
| 481 | 184.03 | wind | 1 | 1440 | > th | dose independent | rect. | 17 | 7 |
| 488 | 184.08 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 16 |
| 504 | 184.15 | humidity | 70 | 270 | > th | dose independent | sin | 7 | NA |
| 574 | 184.28 | humidity | 70 | 720 | > th | dose independent | rect. | 1 | 8 |
| 586 | 184.42 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 3 |
| 604 | 184.43 | wind | 1 | 10 | < th | dose dependent | sin | 20 | NA |
| 613 | 184.48 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 6 |
| 687 | 184.63 | wind | 5 | 10 | > th | dose independent | rect. | 7 | 1 |
| 733 | 184.72 | radiation | 30 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 746 | 184.80 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 760 | 184.85 | humidity | 70 | 270 | < th | dose independent | rect. | 6 | 8 |
| 776 | 184.87 | humidity | 70 | 720 | < th | dose independent | rect. | 7 | 2 |
| 783 | 184.89 | wind | 1 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 791 | 184.94 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 792 | 184.94 | radiation | 20 | 90 | > th | dose independent | rect. | 11 | 21 |
| 794 | 184.95 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 10 | 3 |
| 801 | 184.96 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 21 |
| 806 | 184.97 | humidity | 70 | 270 | < th | dose independent | rect. | 6 | 4 |
| 807 | 184.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 844 | 185.07 | radiation | 30 | 90 | > th | dose independent | rect. | 11 | 3 |
| 861 | 185.12 | temperature | 25 | 90 | > th | dose independent | rect. | 10 | 5 |
| 871 | 185.12 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 4 | 14 |
| 874 | 185.14 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 11 | 1 |
| 914 | 185.21 | temperature | 25 | 10 | > th | dose independent | rect. | 11 | 6 |
| 920 | 185.22 | temperature | 25 | 10 | > th | dose independent | rect. | 11 | 4 |
| 950 | 185.26 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 21 |
| 951 | 185.27 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 7 |
| 957 | 185.28 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 11 | 21 |