Os01g0728400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0728400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.51 | 0.35 | 10.3 | -2.64 | 0.436 | -0.808 | 1.02 | 8.8 | 0.134 | 2.2 | 29.65 | 3980 | -- | -- |
| 59.91 | 0.36 | 10.1 | -1.42 | 0.389 | -0.637 | 0.826 | -- | 0.201 | 1.94 | 18 | 4686 | -- | -- |
| 59.22 | 0.358 | 10.3 | -2.7 | 0.428 | -0.82 | -- | 8.66 | 0.104 | 1.99 | 29.53 | 3951 | -- | -- |
| 61.7 | 0.366 | 10.1 | -1.43 | 0.415 | -0.746 | -- | -- | 0.236 | 1.6 | 17.4 | 6101 | -- | -- |
| 69.69 | 0.389 | 10.3 | -2.69 | -- | -0.827 | -- | 8.56 | 0.0983 | -- | 29.57 | 3283 | -- | -- |
| 64.5 | 0.376 | 10.1 | -1.04 | 0.421 | -- | 0.867 | -- | 0.361 | 1.98 | -- | -- | -- | -- |
| 67.29 | 0.384 | 10.1 | -1.06 | 0.421 | -- | -- | -- | 0.356 | 1.62 | -- | -- | -- | -- |
| 70.12 | 0.392 | 10.1 | -0.99 | -- | 0.394 | -- | -- | 0.371 | -- | 29.57 | 3283 | -- | -- |
| 94.85 | 0.454 | 10.1 | -- | 0.433 | 0.283 | -- | -- | 0.518 | 1.5 | 19.9 | 1050 | -- | -- |
| 78.11 | 0.413 | 10.1 | -1.05 | -- | -- | -- | -- | 0.365 | -- | -- | -- | -- | -- |
| 97.09 | 0.461 | 10.1 | -- | 0.402 | -- | -- | -- | 0.475 | 1.53 | -- | -- | -- | -- |
| 83.99 | 0.427 | 10 | -- | -- | 0.702 | -- | -- | 0.729 | -- | 22.19 | 47520 | -- | -- |
| 107 | 0.483 | 10.1 | -- | -- | -- | -- | -- | 0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.69 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 2 | 53.69 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 3 | 53.69 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 4 | 53.70 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 14 | 53.86 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 17 | 53.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 18 | 53.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 79 | 54.13 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 154 | 54.37 | temperature | 25 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 234 | 54.49 | temperature | 30 | 14400 | < th | dose dependent | sin | 0 | NA |
| 271 | 54.54 | temperature | 20 | 14400 | > th | dose independent | sin | 15 | NA |
| 394 | 54.63 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 407 | 54.63 | temperature | 10 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 434 | 54.65 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 471 | 54.67 | temperature | 10 | 14400 | > th | dose dependent | sin | 1 | NA |
| 533 | 54.70 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 619 | 54.74 | temperature | 20 | 14400 | < th | dose independent | sin | 14 | NA |
| 754 | 54.79 | temperature | 10 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 812 | 54.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 840 | 54.82 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 861 | 54.82 | temperature | 25 | 14400 | < th | dose dependent | rect. | 16 | 20 |
| 870 | 54.83 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 906 | 54.84 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 911 | 54.84 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 913 | 54.84 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |