Os01g0728200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0728200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 308.99 | 0.826 | 6.61 | -1.18 | 1.12 | 2.51 | 0.79 | 2.43 | 0.302 | 2.71 | 23.03 | 612 | -- | -- |
| 315.21 | 0.827 | 6.56 | -0.888 | 1.07 | 2.05 | 0.836 | -- | 0.38 | 2.94 | 23.68 | 536 | -- | -- |
| 310.65 | 0.821 | 6.61 | -1.2 | 1.08 | 2.56 | -- | 2.45 | 0.298 | 2.63 | 22.99 | 549 | -- | -- |
| 317.17 | 0.829 | 6.56 | -0.898 | 1.09 | 2.07 | -- | -- | 0.376 | 2.7 | 23.67 | 562 | -- | -- |
| 333.83 | 0.851 | 6.57 | -1.01 | -- | 2.45 | -- | 1.02 | 0.404 | -- | 31.24 | 184 | -- | -- |
| 371.33 | 0.903 | 6.63 | -1.41 | 1.1 | -- | 1.1 | -- | 0.0206 | 3.62 | -- | -- | -- | -- |
| 374.82 | 0.907 | 6.64 | -1.43 | 1.11 | -- | -- | -- | 0.0145 | 3.41 | -- | -- | -- | -- |
| 334.82 | 0.852 | 6.55 | -0.83 | -- | 2.5 | -- | -- | 0.442 | -- | 31.81 | 186 | -- | -- |
| 335.85 | 0.854 | 6.53 | -- | 1.09 | 2.49 | -- | -- | 0.529 | 2.54 | 23.54 | 586 | -- | -- |
| 443.47 | 0.984 | 6.64 | -1.39 | -- | -- | -- | -- | 0.0438 | -- | -- | -- | -- | -- |
| 428.89 | 0.969 | 6.6 | -- | 1.08 | -- | -- | -- | 0.174 | 3.41 | -- | -- | -- | -- |
| 351.58 | 0.873 | 6.52 | -- | -- | 2.73 | -- | -- | 0.587 | -- | 31.25 | 197 | -- | -- |
| 494.11 | 1.04 | 6.6 | -- | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 303.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 2 | 304.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 20 |
| 13 | 306.79 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 13 |
| 16 | 307.02 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 6 |
| 26 | 308.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 29 | 308.29 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 18 |
| 30 | 308.33 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 21 |
| 31 | 308.33 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 37 | 308.65 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 19 |
| 40 | 308.82 | atmosphere | 1005 | 90 | > th | dose dependent | sin | 19 | NA |
| 58 | 309.28 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 21 |
| 71 | 309.72 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 74 | 309.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 95 | 310.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 108 | 310.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 118 | 310.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 125 | 310.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 7 |
| 204 | 312.02 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 219 | 312.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 260 | 312.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 273 | 312.72 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 289 | 312.86 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 19 |
| 295 | 312.90 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 372 | 313.49 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 379 | 313.53 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 396 | 313.65 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 450 | 313.97 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 23 |
| 466 | 314.08 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 481 | 314.16 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 23 |
| 493 | 314.23 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 11 | 12 |
| 504 | 314.30 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 23 |
| 538 | 314.59 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 564 | 314.76 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 23 |
| 607 | 315.04 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 665 | 315.37 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 720 | 315.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 826 | 316.29 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 873 | 316.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 2 |