Os01g0727800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protease-associated PA domain containing protein.
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Os01g0727800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protease-associated PA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117 | 0.508 | 13 | 0.84 | 0.907 | 2.79 | -1.23 | 0.646 | -0.333 | 22.3 | 9.042 | 780 | -- | -- |
| 117.29 | 0.504 | 13 | 0.739 | 0.911 | 2.8 | -1.09 | -- | -0.362 | 22.3 | 8.962 | 777 | -- | -- |
| 122.04 | 0.515 | 13 | 0.717 | 0.893 | 2.9 | -- | -0.342 | -0.407 | 22.9 | 10.5 | 718 | -- | -- |
| 122.1 | 0.515 | 13 | 0.775 | 0.915 | 2.83 | -- | -- | -0.357 | 22.7 | 10.6 | 734 | -- | -- |
| 165.12 | 0.598 | 13 | 0.528 | -- | 3.5 | -- | -0.427 | -0.487 | -- | 12.69 | 770 | -- | -- |
| 218.78 | 0.693 | 12.9 | 1.46 | 1.5 | -- | -0.915 | -- | 0.0705 | 21.9 | -- | -- | -- | -- |
| 222.01 | 0.698 | 12.9 | 1.49 | 1.51 | -- | -- | -- | 0.0723 | 21.9 | -- | -- | -- | -- |
| 165.27 | 0.599 | 13 | 0.605 | -- | 3.5 | -- | -- | -0.467 | -- | 11.4 | 773 | -- | -- |
| 135.77 | 0.543 | 13 | -- | 0.953 | 3.03 | -- | -- | -0.491 | 21.6 | 11.89 | 916 | -- | -- |
| 358.28 | 0.884 | 12.9 | 1.51 | -- | -- | -- | -- | 0.0718 | -- | -- | -- | -- | -- |
| 280.81 | 0.784 | 13 | -- | 1.51 | -- | -- | -- | -0.0941 | 21.9 | -- | -- | -- | -- |
| 173.89 | 0.614 | 13 | -- | -- | 3.73 | -- | -- | -0.564 | -- | 12.28 | 783 | -- | -- |
| 418.42 | 0.955 | 12.9 | -- | -- | -- | -- | -- | -0.0957 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 3 | 104.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 5 | 104.51 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 10 | 104.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 17 |
| 30 | 106.38 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 202 | 113.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 210 | 113.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 305 | 115.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 428 | 116.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 673 | 117.26 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 780 | 117.78 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 783 | 117.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |