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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0727600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.12 (0.0346) R2 : 0.659
β1 : 1.43 (0.132) R2dD : 0.106 R2D : 0.0725
β2 : 2.71 (0.33) R2dC : 0.854 R2C : -1.82
β3 : -4.32 (0.332) R2dE : 2.15 R2E : -0.487
β4 : 8.59 (1.45) R2dD*C : 0.572 R2D*C : -0.748
β5 : -10.5 (1.5) R2dD*E : 0.789 R2D*E : -0.553
γ1 : 0.768 (0.0713) R2dN8 : 0.117 R2N8 : 0.0244
σ : 0.629
deviance : 179.16
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_____
C
peak time of C : 10.3
E
wheather : precipitation
threshold : 0.7063
memory length : 737
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 19

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
179.16 0.629 4.12 1.43 2.71 -4.32 8.59 -10.5 0.768 10.3 0.7063 737 18 19
220.47 0.692 4.14 1.79 2.48 -4.69 -3.11 -- 0.792 7.35 0.4502 961 17.4 12.9
197.11 0.654 4.09 1.74 3.36 -4.9 -- -2.27 0.82 10.4 0.7563 747 18.2 18.4
205.16 0.667 4.1 1.77 3.23 -4.83 -- -- 0.799 10.3 0.7645 734 18.1 18.8
215.48 0.684 4.21 1.69 -- -1.92 -- -3.47 0.696 -- 0.5 785 16.3 19.1
233.56 0.716 4.26 1.91 1.73 -- 2.24 -- 0.735 20.4 -- -- -- --
249.08 0.739 4.26 1.84 1.73 -- -- -- 0.735 20.5 -- -- -- --
219.88 0.691 4.22 1.7 -- -2.22 -- -- 0.732 -- 0.1159 729 16.5 21
279.03 0.778 4.18 -- 3.33 -5.12 -- -- 0.601 10.1 0.02095 745 17.9 18.9
415.61 0.953 4.22 1.83 -- -- -- -- 0.718 -- -- -- -- --
338.09 0.86 4.31 -- 1.72 -- -- -- 0.53 20.5 -- -- -- --
290.39 0.794 4.26 -- -- -2.79 -- -- 0.555 -- 0.08596 776 15.6 22.3
503.92 1.05 4.26 -- -- -- -- -- 0.515 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.61 precipitation 0.1 720 < th dose independent rect. 18 19
2 181.61 precipitation 0.1 720 < th dose dependent rect. 18 19
3 181.92 precipitation 0.1 720 < th dose independent rect. 19 1
4 181.92 precipitation 0.1 720 < th dose dependent rect. 19 1
5 182.64 precipitation 0.1 720 < th dose independent rect. 18 3
6 182.64 precipitation 0.1 720 < th dose dependent rect. 18 3
7 184.73 precipitation 0.1 720 < th dose independent rect. 18 11
8 184.73 precipitation 0.1 720 < th dose dependent rect. 18 11
9 184.94 precipitation 0.1 720 < th dose independent rect. 9 21
10 184.94 precipitation 0.1 720 < th dose dependent rect. 9 21
11 186.39 humidity 90.0 720 < th dose independent rect. 19 1
12 186.60 precipitation 0.1 720 < th dose independent rect. 10 19
13 186.60 precipitation 0.1 720 < th dose dependent rect. 10 19
14 186.94 humidity 50.0 720 > th dose dependent rect. 21 4
17 187.69 precipitation 0.1 720 < th dose independent rect. 2 19
18 187.69 precipitation 0.1 720 < th dose dependent rect. 2 19
26 189.59 precipitation 0.1 14400 < th dose independent rect. 17 1
27 189.59 precipitation 0.1 14400 < th dose dependent rect. 17 1
29 189.77 precipitation 0.1 720 < th dose independent rect. 17 13
31 189.77 precipitation 0.1 720 < th dose dependent rect. 17 13
32 189.81 precipitation 0.1 720 < th dose independent rect. 9 12
33 189.81 precipitation 0.1 720 < th dose dependent rect. 9 12
36 189.93 precipitation 0.1 720 < th dose independent rect. 10 10
37 189.93 precipitation 0.1 720 < th dose dependent rect. 10 10
41 190.06 humidity 50.0 720 > th dose dependent rect. 20 6
54 190.75 wind 3.0 43200 < th dose dependent rect. 1 5
56 190.77 precipitation 0.1 270 < th dose independent rect. 1 12
57 190.77 precipitation 0.1 270 < th dose dependent rect. 1 12
61 191.08 wind 3.0 43200 < th dose dependent rect. 1 3
66 191.27 precipitation 0.1 4320 < th dose independent rect. 13 3
67 191.27 precipitation 0.1 4320 < th dose dependent rect. 13 3
70 191.53 precipitation 0.1 14400 > th dose independent rect. 17 1
81 192.00 radiation 40.0 720 < th dose independent rect. 14 3
86 192.19 precipitation 0.1 720 < th dose independent rect. 1 5
87 192.19 precipitation 0.1 720 < th dose dependent rect. 1 5
94 192.41 precipitation 0.1 4320 > th dose independent rect. 13 3
95 192.43 wind 3.0 43200 < th dose independent rect. 24 9
96 192.49 precipitation 0.1 14400 > th dose dependent rect. 17 1
97 192.50 precipitation 0.1 90 < th dose independent rect. 19 12
98 192.50 precipitation 0.1 90 < th dose dependent rect. 19 12
99 192.53 wind 3.0 43200 > th dose independent rect. 3 6
100 192.54 wind 3.0 43200 < th dose independent rect. 3 6
103 192.59 wind 3.0 43200 > th dose independent rect. 5 4
120 192.86 wind 3.0 43200 > th dose independent rect. 1 8
123 192.90 wind 1.0 720 > th dose independent rect. 18 3
129 193.00 precipitation 0.1 4320 > th dose dependent rect. 9 7
131 193.07 wind 3.0 43200 > th dose independent rect. 7 1
143 193.23 humidity 80.0 14400 > th dose independent rect. 15 1
145 193.30 precipitation 0.1 4320 > th dose independent rect. 9 8
147 193.31 precipitation 0.1 4320 < th dose independent rect. 9 8
148 193.31 precipitation 0.1 4320 < th dose dependent rect. 9 8
160 193.46 precipitation 0.1 4320 > th dose dependent rect. 11 5
171 193.63 radiation 40.0 720 < th dose independent rect. 14 19
172 193.64 wind 3.0 43200 < th dose independent rect. 7 1
181 193.70 wind 1.0 43200 > th dose dependent rect. 24 8
198 193.96 radiation 40.0 720 < th dose independent rect. 14 11
218 194.17 humidity 90.0 720 < th dose dependent rect. 19 1
236 194.36 wind 1.0 43200 > th dose dependent rect. 3 5
250 194.54 wind 3.0 43200 > th dose independent rect. 5 1
288 194.85 precipitation 0.1 4320 < th dose independent rect. 6 11
289 194.85 precipitation 0.1 4320 < th dose dependent rect. 6 11
294 194.89 wind 1.0 43200 > th dose dependent rect. 5 1
295 194.89 humidity 70.0 14400 > th dose dependent rect. 14 1
303 194.96 humidity 80.0 14400 < th dose independent rect. 14 2
307 195.00 humidity 70.0 14400 < th dose independent rect. 18 1
351 195.37 wind 9.0 43200 < th dose dependent rect. 5 1
419 195.87 humidity 70.0 14400 > th dose independent rect. 18 14
438 196.01 humidity 80.0 14400 > th dose independent rect. 13 9
446 196.11 humidity 70.0 14400 > th dose independent rect. 18 2
512 196.55 wind 1.0 43200 > th dose dependent rect. 7 1
522 196.60 wind 1.0 43200 > th dose independent rect. 1 1
533 196.62 humidity 70.0 14400 < th dose independent rect. 18 14
558 196.76 humidity 70.0 14400 > th dose independent rect. 18 11
562 196.77 humidity 70.0 14400 > th dose independent rect. 18 9
572 196.81 humidity 90.0 720 > th dose dependent rect. 6 18
598 197.04 humidity 70.0 1440 > th dose dependent rect. 5 10
609 197.08 wind 9.0 14400 > th dose dependent rect. 10 1
615 197.10 humidity 80.0 14400 < th dose independent rect. 13 9
648 197.23 temperature 30.0 720 < th dose independent rect. 6 3
671 197.33 humidity 90.0 14400 < th dose dependent rect. 15 1
714 197.51 humidity 70.0 720 > th dose dependent rect. 6 19
737 197.61 temperature 25.0 14400 > th dose dependent rect. 13 1
754 197.68 temperature 30.0 14400 < th dose independent rect. 14 1
792 197.87 wind 9.0 43200 < th dose dependent rect. 7 1
796 197.88 humidity 60.0 14400 > th dose dependent rect. 13 8
821 197.97 humidity 80.0 1440 < th dose independent rect. 7 8
833 198.01 radiation 40.0 1440 < th dose dependent rect. 18 2
845 198.08 humidity 70.0 1440 > th dose dependent sin 2 NA
847 198.08 humidity 70.0 1440 > th dose dependent rect. 20 20
878 198.15 humidity 70.0 1440 > th dose dependent rect. 10 4
889 198.21 humidity 70.0 14400 < th dose independent rect. 16 4
896 198.23 humidity 80.0 1440 < th dose independent rect. 9 6
899 198.24 humidity 70.0 14400 < th dose independent sin 14 NA
918 198.28 radiation 40.0 720 < th dose independent rect. 6 3
919 198.28 humidity 70.0 14400 < th dose independent rect. 16 15
930 198.30 temperature 30.0 14400 > th dose independent rect. 14 1
987 198.41 humidity 70.0 14400 > th dose independent sin 13 NA