Os01g0727400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0727400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.76 | 0.248 | 10.7 | -0.892 | 0.185 | -0.247 | -0.0572 | -2.17 | -0.15 | 21.7 | 30.04 | 2497 | -- | -- |
| 28.13 | 0.247 | 10.7 | -0.494 | 0.172 | -0.476 | -0.0255 | -- | -0.144 | 22.3 | 31.16 | 2554 | -- | -- |
| 27.77 | 0.245 | 10.7 | -0.901 | 0.188 | -0.249 | -- | -2.2 | -0.15 | 21.8 | 29.93 | 2474 | -- | -- |
| 28.05 | 0.247 | 10.7 | -0.51 | 0.182 | -0.483 | -- | -- | -0.148 | 21.8 | 31.2 | 2514 | -- | -- |
| 29.63 | 0.254 | 10.7 | -0.96 | -- | -0.178 | -- | -2.32 | -0.15 | -- | 30 | 2708 | -- | -- |
| 37.59 | 0.287 | 10.7 | -0.641 | 0.149 | -- | -0.23 | -- | -0.0548 | 20.4 | -- | -- | -- | -- |
| 37.75 | 0.288 | 10.7 | -0.634 | 0.149 | -- | -- | -- | -0.0553 | 20.7 | -- | -- | -- | -- |
| 29.96 | 0.255 | 10.7 | -0.518 | -- | -0.459 | -- | -- | -0.149 | -- | 31.2 | 2601 | -- | -- |
| 34.49 | 0.274 | 10.7 | -- | 0.17 | -0.564 | -- | -- | -0.118 | 21.8 | 31.49 | 2588 | -- | -- |
| 39 | 0.292 | 10.6 | -0.635 | -- | -- | -- | -- | -0.0565 | -- | -- | -- | -- | -- |
| 48.35 | 0.325 | 10.6 | -- | 0.151 | -- | -- | -- | 0.0154 | 20.4 | -- | -- | -- | -- |
| 36.43 | 0.281 | 10.7 | -- | -- | -0.515 | -- | -- | -0.086 | -- | 30 | 2793 | -- | -- |
| 49.62 | 0.329 | 10.6 | -- | -- | -- | -- | -- | 0.0139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.36 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 2 | 28.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 3 | 28.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 4 | 28.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 6 | 28.42 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 7 | 28.43 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 9 | 28.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 4 |
| 12 | 28.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 17 | 28.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 18 | 28.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 28 | 28.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 52 | 28.54 | temperature | 30 | 1440 | < th | dose independent | sin | 6 | NA |
| 81 | 28.56 | temperature | 30 | 1440 | > th | dose independent | sin | 4 | NA |
| 153 | 28.59 | temperature | 25 | 4320 | > th | dose dependent | rect. | 1 | 10 |
| 154 | 28.59 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 17 |
| 160 | 28.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 14 |
| 268 | 28.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 316 | 28.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 318 | 28.68 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 421 | 28.72 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 679 | 28.75 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 684 | 28.76 | temperature | 30 | 4320 | < th | dose independent | sin | 18 | NA |
| 737 | 28.77 | temperature | 30 | 4320 | > th | dose independent | sin | 18 | NA |
| 742 | 28.77 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 760 | 28.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 17 |
| 801 | 28.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 806 | 28.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |