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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0727100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 8 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.22 (0.0483) R2 : 0.647
β1 : -1.97 (0.232) R2dD : 0.12 R2D : 0.166
β2 : 1.14 (0.11) R2dC : 0.0887 R2C : 0.111
β3 : 1.57 (0.184) R2dE : 0.0736 R2E : 0.0214
β4 : -3.28 (0.455) R2dD*C : 0.048 R2D*C : 0.0075
β5 : 7.14 (0.928) R2dD*E : 0.101 R2D*E : 0.213
γ1 : -1.26 (0.109) R2dN8 : 0.189 R2N8 : 0.0768
σ : 0.828
deviance : 310.71
__
_____
C
peak time of C : 9.93
E
wheather : temperature
threshold : 20.96
memory length : 15
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
310.71 0.828 5.22 -1.97 1.14 1.57 -3.28 7.14 -1.26 9.93 20.96 15 -- --
344.28 0.864 5.39 -3.34 1.08 2.44 -2.17 -- -1.7 8.96 18.65 24 -- --
329.99 0.846 5.17 -2.05 1.89 1.22 -- 7.1 -1.16 10.7 23.79 674 -- --
346.04 0.866 5.27 -3.03 1.84 1.5 -- -- -1.31 11.1 26.1 824 -- --
434.53 0.976 5.31 -2.57 -- 1.86 -- 5.07 -1.37 -- 23.79 674 -- --
422.78 0.964 5.29 -2.84 1.54 -- -0.963 -- -1.29 11.5 -- -- -- --
426.36 0.967 5.29 -2.88 1.55 -- -- -- -1.29 11.7 -- -- -- --
450.37 0.993 5.39 -3.26 -- 2.22 -- -- -1.57 -- 23.79 674 -- --
607.12 1.15 5.18 -- 1.76 1.26 -- -- -0.835 11.2 29.18 775 -- --
576.52 1.12 5.33 -2.92 -- -- -- -- -1.31 -- -- -- -- --
644.26 1.19 5.22 -- 1.58 -- -- -- -0.968 11.8 -- -- -- --
721.65 1.26 5.31 -- -- 1.84 -- -- -1.24 -- 19.5 28 -- --
801.38 1.32 5.25 -- -- -- -- -- -0.983 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 310.77 temperature 20 10 > th dose dependent rect. 3 23
2 311.50 temperature 20 10 > th dose dependent no NA NA
4 312.00 temperature 20 10 > th dose dependent rect. 13 23
5 312.10 temperature 20 10 > th dose dependent rect. 15 23
7 312.57 temperature 20 10 > th dose dependent rect. 7 23
9 313.24 temperature 20 10 > th dose dependent rect. 1 23
10 313.40 temperature 20 10 > th dose dependent rect. 5 23
15 313.79 temperature 20 10 > th dose dependent rect. 23 23
30 315.62 temperature 20 10 > th dose dependent rect. 9 23
32 315.77 temperature 20 10 > th dose dependent rect. 21 23
42 316.73 temperature 30 10 < th dose dependent rect. 12 20
44 316.81 temperature 30 90 < th dose dependent rect. 11 22
48 317.34 temperature 20 10 > th dose dependent rect. 11 23
49 317.36 temperature 30 10 < th dose dependent rect. 10 22
62 318.38 temperature 20 10 > th dose dependent rect. 17 23
63 318.41 temperature 30 10 < th dose dependent rect. 13 23
64 318.47 temperature 30 10 < th dose dependent rect. 19 23
71 318.76 temperature 30 10 < th dose dependent rect. 21 23
80 319.10 temperature 30 10 < th dose dependent no NA NA
88 319.37 temperature 30 10 < th dose dependent rect. 1 23
95 319.67 temperature 30 10 < th dose dependent rect. 15 23
102 320.01 temperature 30 10 < th dose dependent rect. 23 23
104 320.10 temperature 30 10 < th dose dependent rect. 17 23
131 322.13 temperature 30 270 < th dose dependent rect. 11 18
138 322.65 temperature 10 720 > th dose dependent rect. 6 17
146 323.05 temperature 25 720 > th dose dependent rect. 18 21
153 323.36 temperature 20 90 > th dose dependent rect. 19 23
159 323.61 temperature 30 10 < th dose dependent rect. 3 23
171 324.03 temperature 25 720 > th dose dependent rect. 19 18
179 324.12 temperature 30 10 < th dose dependent rect. 7 23
188 324.48 temperature 30 720 < th dose independent rect. 16 21
195 324.66 temperature 10 720 > th dose dependent sin 22 NA
257 326.28 temperature 10 10 > th dose dependent sin 16 NA
280 326.93 temperature 20 30 > th dose dependent rect. 7 19
288 327.18 temperature 25 720 > th dose dependent rect. 6 18
358 327.88 temperature 25 720 > th dose dependent no NA NA
370 328.01 temperature 25 720 > th dose dependent rect. 9 23
396 328.28 temperature 25 1440 > th dose dependent rect. 7 3
404 328.36 temperature 25 720 > th dose dependent rect. 11 23
420 328.61 temperature 25 1440 > th dose dependent rect. 8 1
467 329.13 temperature 25 720 > th dose dependent rect. 13 23
551 329.92 temperature 10 720 > th dose dependent rect. 11 8
591 330.28 temperature 25 720 > th dose dependent sin 8 NA
615 330.51 temperature 30 1440 < th dose independent rect. 1 11
618 330.55 temperature 30 1440 < th dose independent rect. 1 9
619 330.55 temperature 15 720 > th dose dependent rect. 9 9
623 330.59 temperature 30 10 < th dose dependent sin 14 NA
652 330.90 temperature 30 1440 < th dose independent rect. 4 8
668 331.00 temperature 30 720 < th dose independent rect. 9 19
694 331.22 temperature 30 1440 < th dose independent rect. 22 14
718 331.36 temperature 30 1440 < th dose independent rect. 19 17
732 331.45 temperature 30 1440 < th dose independent rect. 6 6
758 331.70 temperature 30 1440 < th dose independent sin 8 NA
774 331.87 temperature 30 1440 < th dose independent rect. 8 4
799 332.08 radiation 20 4320 > th dose independent rect. 15 18
864 332.48 temperature 30 1440 < th dose independent rect. 19 19
951 333.04 temperature 30 1440 > th dose independent rect. 8 4
969 333.08 radiation 1 720 > th dose dependent sin 12 NA