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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0726100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pollen Ole e 1 allergen and extensin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.69 (0.0272) R2 : 0.0189
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.17 (0.0574) R2dN8 : 0.0244 R2N8 : 0.0189
σ : 0.513
deviance : 120.8
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
88.79 0.443 3.54 1.06 0.396 -0.698 -0.166 1.49 0.264 8.85 22.23 4027 -- --
94.25 0.452 3.6 0.795 0.391 -0.869 -0.231 -- 0.176 9.06 21.32 6900 -- --
88.88 0.439 3.54 1.06 0.397 -0.699 -- 1.5 0.266 8.8 22.22 4036 -- --
94.02 0.452 3.61 0.777 0.406 -0.866 -- -- 0.156 9.22 21.3 4728 -- --
97.32 0.459 3.56 1.03 -- -0.729 -- 1.4 0.266 -- 22.23 3685 -- --
110.15 0.492 3.67 0.172 0.41 -- -0.207 -- -0.153 9.25 -- -- -- --
110.3 0.492 3.67 0.164 0.411 -- -- -- -0.154 9.18 -- -- -- --
101.25 0.469 3.62 0.602 -- -0.798 -- -- 0.165 -- 22 3583 -- --
97.45 0.46 3.64 -- 0.38 -0.568 -- -- 0.00527 8.99 22.39 2002 -- --
120.1 0.512 3.68 0.163 -- -- -- -- -0.152 -- -- -- -- --
111.01 0.493 3.68 -- 0.411 -- -- -- -0.172 9.15 -- -- -- --
105.22 0.478 3.64 -- -- -0.605 -- -- 0.0319 -- 22.5 2265 -- --
120.8 0.513 3.69 -- -- -- -- -- -0.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.29 temperature 10 720 > th dose dependent rect. 20 14
23 83.11 temperature 30 720 < th dose dependent rect. 18 18
24 83.15 temperature 15 720 > th dose dependent sin 9 NA
32 83.44 temperature 30 720 < th dose dependent sin 9 NA
84 84.54 temperature 30 270 < th dose dependent rect. 23 14
101 84.79 temperature 25 720 < th dose dependent rect. 21 10
102 84.82 temperature 30 720 < th dose dependent rect. 23 7
106 84.87 temperature 20 720 > th dose independent rect. 21 13
156 85.45 radiation 10 4320 > th dose dependent rect. 16 16
157 85.46 temperature 30 720 < th dose dependent rect. 1 4
161 85.49 temperature 20 720 < th dose independent sin 9 NA
167 85.52 temperature 20 720 > th dose independent sin 9 NA
189 85.71 temperature 20 720 < th dose independent rect. 20 15
251 86.14 radiation 1 4320 > th dose dependent rect. 5 2
285 86.27 humidity 70 43200 > th dose independent rect. 6 4
326 86.37 radiation 40 4320 < th dose dependent rect. 5 2
328 86.38 radiation 40 4320 < th dose dependent rect. 2 6
332 86.39 radiation 40 4320 < th dose dependent rect. 22 10
333 86.39 radiation 40 4320 < th dose dependent rect. 20 12
388 86.56 humidity 70 43200 < th dose independent rect. 6 4
393 86.59 temperature 20 720 < th dose independent rect. 23 7
394 86.60 radiation 30 4320 < th dose independent rect. 16 16
461 86.87 temperature 20 4320 < th dose independent rect. 22 1
494 86.97 temperature 20 4320 > th dose independent rect. 22 1
530 87.06 temperature 30 90 < th dose dependent rect. 9 22
549 87.12 humidity 60 43200 < th dose dependent rect. 7 2
553 87.16 humidity 60 43200 < th dose independent rect. 16 7
559 87.18 temperature 20 720 < th dose independent rect. 1 5
561 87.18 humidity 50 43200 < th dose dependent rect. 15 1
580 87.24 humidity 60 43200 > th dose independent rect. 16 7
581 87.24 humidity 60 43200 < th dose independent rect. 4 19
583 87.25 humidity 50 43200 > th dose independent rect. 16 1
586 87.25 radiation 30 4320 < th dose independent rect. 24 9
587 87.25 radiation 30 4320 < th dose independent rect. 18 15
603 87.27 humidity 50 43200 < th dose dependent rect. 13 4
606 87.28 radiation 30 4320 < th dose independent rect. 2 7
616 87.29 radiation 30 4320 < th dose independent rect. 6 3
637 87.31 humidity 60 43200 < th dose independent rect. 15 23
688 87.39 humidity 50 43200 < th dose independent rect. 16 1
694 87.40 humidity 60 43200 < th dose independent rect. 5 9
702 87.41 humidity 60 43200 < th dose independent no NA NA
705 87.41 humidity 60 43200 < th dose independent rect. 11 23
707 87.41 humidity 60 43200 < th dose independent rect. 18 23
715 87.43 humidity 60 43200 < th dose independent sin 3 NA
726 87.43 humidity 50 43200 < th dose dependent rect. 11 21
733 87.44 humidity 60 43200 > th dose independent rect. 4 20
735 87.44 humidity 60 43200 > th dose independent rect. 15 23
741 87.45 humidity 50 43200 > th dose independent rect. 6 6
756 87.46 humidity 50 43200 < th dose independent rect. 6 6
757 87.46 radiation 30 43200 < th dose independent rect. 18 14
766 87.46 humidity 50 43200 < th dose dependent rect. 5 13
770 87.47 radiation 30 43200 < th dose independent rect. 1 7
796 87.48 radiation 30 43200 < th dose independent rect. 5 3
820 87.48 humidity 50 43200 < th dose dependent rect. 21 21
830 87.49 humidity 50 43200 < th dose dependent rect. 11 11
856 87.50 humidity 80 43200 < th dose dependent rect. 8 2
888 87.52 humidity 50 43200 > th dose independent rect. 20 16
900 87.52 humidity 60 43200 > th dose independent rect. 18 23
920 87.53 humidity 70 43200 < th dose dependent rect. 7 11
929 87.54 humidity 60 43200 > th dose independent no NA NA
934 87.54 humidity 50 43200 < th dose independent rect. 20 16
940 87.54 humidity 50 43200 < th dose dependent sin 19 NA
952 87.55 humidity 60 43200 > th dose independent rect. 5 9