Os01g0725400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF588 family protein.
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Os01g0725400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF588 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 276.75 | 0.782 | 5.74 | 4.64 | 0.825 | 2.79 | 0.807 | 1.29 | 0.877 | 3.38 | 23.2 | 2073 | -- | -- |
| 279.97 | 0.779 | 5.69 | 5.12 | 0.817 | 2.81 | 0.743 | -- | 1 | 3.43 | 23.19 | 2056 | -- | -- |
| 278.73 | 0.778 | 5.74 | 4.63 | 0.818 | 2.78 | -- | 1.27 | 0.868 | 3.52 | 23.18 | 2044 | -- | -- |
| 281.87 | 0.782 | 5.69 | 5.11 | 0.816 | 2.82 | -- | -- | 1 | 3.5 | 23.18 | 2047 | -- | -- |
| 312.78 | 0.824 | 5.75 | 4.64 | -- | 2.74 | -- | 1.29 | 0.858 | -- | 23.17 | 1898 | -- | -- |
| 604.87 | 1.15 | 5.96 | 3.95 | 0.764 | -- | 0.74 | -- | -0.198 | 4.52 | -- | -- | -- | -- |
| 606.33 | 1.15 | 5.96 | 3.94 | 0.77 | -- | -- | -- | -0.202 | 4.59 | -- | -- | -- | -- |
| 315.63 | 0.827 | 5.7 | 5.12 | -- | 2.77 | -- | -- | 0.993 | -- | 23.17 | 1893 | -- | -- |
| 891.99 | 1.39 | 5.94 | -- | 0.861 | 1.65 | -- | -- | -0.0853 | 4.27 | 22.8 | 1839 | -- | -- |
| 637.94 | 1.18 | 5.97 | 3.97 | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
| 1016.18 | 1.49 | 6.06 | -- | 0.844 | -- | -- | -- | -0.641 | 4.47 | -- | -- | -- | -- |
| 931.64 | 1.42 | 5.94 | -- | -- | 1.63 | -- | -- | -0.0577 | -- | 22.8 | 1836 | -- | -- |
| 1054.32 | 1.52 | 6.06 | -- | -- | -- | -- | -- | -0.622 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 283.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 5 | 284.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 15 | 284.87 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 17 |
| 39 | 285.68 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 43 | 285.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 11 |
| 49 | 285.92 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 370 | 290.52 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 404 | 290.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 427 | 291.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 451 | 291.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 614 | 293.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 645 | 293.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 657 | 293.49 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 679 | 293.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 760 | 294.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 808 | 294.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 878 | 295.46 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |