Os01g0723400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Malic oxidoreductase family protein.
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Os01g0723400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Malic oxidoreductase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.46 | 0.34 | 13.1 | -0.366 | 2.21 | 1.1 | 0.72 | 0.508 | 0.0689 | 16.9 | 25.7 | 11 | -- | -- |
| 52.97 | 0.342 | 13.1 | -0.295 | 2.2 | 1.05 | 0.567 | -- | 0.0817 | 16.9 | 25.7 | 11 | -- | -- |
| 53.64 | 0.341 | 13.1 | -0.317 | 2.2 | 1.07 | -- | 0.208 | 0.0754 | 16.9 | 25.69 | 10 | -- | -- |
| 53.72 | 0.341 | 13.1 | -0.293 | 2.2 | 1.06 | -- | -- | 0.0812 | 16.9 | 25.7 | 11 | -- | -- |
| 289.17 | 0.796 | 13.1 | -0.539 | -- | 0.583 | -- | 0.17 | -0.165 | -- | 19.49 | 8 | -- | -- |
| 69.79 | 0.392 | 13.1 | -0.538 | 2.05 | -- | 0.504 | -- | -0.141 | 17.2 | -- | -- | -- | -- |
| 70.43 | 0.393 | 13.1 | -0.538 | 2.05 | -- | -- | -- | -0.139 | 17.2 | -- | -- | -- | -- |
| 259.32 | 0.75 | 13.2 | -0.911 | -- | -1.45 | -- | -- | -0.385 | -- | 35.01 | 293 | -- | -- |
| 55.8 | 0.348 | 13.1 | -- | 2.24 | 1.16 | -- | -- | 0.11 | 16.8 | 25.7 | 13 | -- | -- |
| 290.61 | 0.797 | 13.1 | -0.61 | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
| 78.06 | 0.413 | 13.1 | -- | 2.06 | -- | -- | -- | -0.0793 | 17.2 | -- | -- | -- | -- |
| 279.44 | 0.779 | 13.1 | -- | -- | -1.14 | -- | -- | -0.252 | -- | 38.05 | 281 | -- | -- |
| 300.42 | 0.809 | 13.1 | -- | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 5 | 45.84 | temperature | 20 | 10 | > th | dose dependent | sin | 9 | NA |
| 12 | 46.40 | temperature | 30 | 10 | < th | dose dependent | sin | 9 | NA |
| 59 | 49.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 84 | 49.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 92 | 49.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 111 | 50.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 168 | 50.39 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 248 | 50.97 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 307 | 51.35 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 15 |
| 335 | 51.65 | temperature | 25 | 10 | > th | dose independent | sin | 9 | NA |
| 344 | 51.75 | temperature | 25 | 30 | < th | dose independent | sin | 9 | NA |
| 345 | 51.75 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 422 | 52.20 | temperature | 25 | 10 | > th | dose independent | rect. | 18 | 16 |
| 454 | 52.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 465 | 52.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 14 |
| 480 | 52.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 571 | 53.03 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 574 | 53.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 588 | 53.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 595 | 53.12 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 598 | 53.12 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 601 | 53.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 602 | 53.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 603 | 53.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 608 | 53.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 676 | 53.38 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 678 | 53.39 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 22 |
| 709 | 53.56 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 778 | 53.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 7 |
| 820 | 53.86 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 887 | 54.06 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 7 |
| 939 | 54.22 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 8 |
| 966 | 54.31 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 15 |