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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0722300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0424) R2 : -0.871
β1 : 0.0437 (0.156) R2dD : 0.000983 R2D : 0.00102
β2 : 0.174 (0.105) R2dC : 0.0249 R2C : 0.00928
β3 : 3.39 (0.223) R2dE : -0.803 R2E : -0.695
β4 : -0.0218 (0.426) R2dD*C : -0.000245 R2D*C : 2.02e-05
β5 : 7.59 (0.904) R2dD*E : -0.202 R2D*E : -0.081
γ1 : -0.0434 (0.0905) R2dN8 : 0.000307 R2N8 : 0.00163
σ : 0.519
deviance : 121.8
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C
peak time of C : 9.13
E
wheather : radiation
threshold : 5
memory length : 3
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.8 0.519 2.99 0.0437 0.174 3.39 -0.0218 7.59 -0.0434 9.13 5 3 15 1
149.08 0.573 2.99 0.0766 0.18 0.546 -0.0988 -- -0.0333 8.76 5 3 15 1
144.2 0.564 2.99 0.0651 0.18 0.481 -- 2.47 -0.042 8.82 5 3 15 1
148.47 0.568 2.98 0.0718 0.188 0.6 -- -- -0.0232 8.84 5.482 10 15 0.834
146.02 0.566 3 0.0652 -- 0.447 -- 2.47 -0.0419 -- 5 4 15 1
152.58 0.579 3 0.078 0.164 -- -0.0422 -- -0.0513 10.2 -- -- -- --
152.59 0.578 3 0.0764 0.164 -- -- -- -0.0513 10.3 -- -- -- --
150.32 0.571 2.99 0.0773 -- 0.596 -- -- -0.0245 -- 5.48 10 15 0.833
148.62 0.568 2.98 -- 0.188 0.603 -- -- -0.0276 8.66 5.6 10 15.1 0.808
154.22 0.58 3 0.0739 -- -- -- -- -0.0518 -- -- -- -- --
152.74 0.578 3 -- 0.163 -- -- -- -0.0599 10.3 -- -- -- --
150.46 0.571 2.99 -- -- 0.598 -- -- -0.0323 -- 5.68 10 15.1 0.74
154.36 0.58 3 -- -- -- -- -- -0.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.80 radiation 40.0 90 > th dose independent rect. 15 1
18 121.80 radiation 40.0 90 > th dose dependent rect. 15 1
35 135.08 wind 1.0 1440 < th dose independent rect. 13 2
36 135.21 wind 1.0 1440 > th dose independent rect. 13 2
37 135.22 wind 1.0 1440 < th dose dependent rect. 13 2
38 135.44 wind 1.0 270 < th dose independent rect. 14 1
41 135.74 wind 3.0 270 < th dose dependent rect. 11 4
47 135.89 wind 1.0 270 < th dose independent rect. 11 4
54 136.24 radiation 40.0 4320 > th dose independent rect. 15 1
98 136.54 wind 3.0 270 < th dose dependent rect. 12 1
119 136.97 wind 1.0 270 < th dose independent rect. 12 1
124 137.10 wind 1.0 270 < th dose dependent rect. 14 1
128 137.18 wind 1.0 1440 < th dose independent rect. 11 10
227 138.03 precipitation 0.1 1440 > th dose independent rect. 8 1
228 138.03 precipitation 0.1 1440 > th dose dependent rect. 8 1
277 138.82 wind 1.0 270 < th dose independent sin 20 NA
288 138.97 wind 1.0 1440 < th dose independent sin 21 NA
312 139.28 wind 1.0 270 > th dose independent sin 20 NA
350 139.70 wind 1.0 1440 > th dose independent sin 22 NA
361 139.91 wind 1.0 720 > th dose independent rect. 7 13
386 140.35 wind 1.0 720 < th dose dependent rect. 5 20
390 140.38 wind 1.0 720 < th dose independent rect. 7 18
396 140.42 wind 1.0 1440 < th dose dependent sin 21 NA
399 140.50 wind 1.0 270 < th dose dependent sin 20 NA
410 140.62 wind 1.0 720 < th dose independent rect. 5 20
431 140.68 radiation 1.0 4320 > th dose independent rect. 7 1
432 140.69 radiation 1.0 4320 < th dose independent rect. 7 1
438 140.75 wind 1.0 1440 < th dose independent rect. 11 14
449 140.82 wind 1.0 720 < th dose dependent rect. 7 18
454 140.87 radiation 1.0 4320 < th dose dependent rect. 7 1
474 141.07 precipitation 0.1 4320 > th dose dependent rect. 4 7
477 141.08 precipitation 0.1 4320 > th dose dependent rect. 4 9
482 141.11 precipitation 0.1 4320 < th dose independent rect. 4 7
486 141.11 precipitation 0.1 4320 < th dose dependent rect. 4 7
487 141.12 precipitation 0.1 4320 < th dose independent rect. 7 1
488 141.12 precipitation 0.1 4320 < th dose dependent rect. 7 1
512 141.23 precipitation 0.1 4320 > th dose independent rect. 4 7
513 141.23 wind 1.0 720 > th dose independent rect. 7 18
527 141.30 radiation 1.0 4320 > th dose independent rect. 7 4
561 141.45 wind 1.0 1440 > th dose independent rect. 11 14
592 141.61 wind 1.0 720 > th dose independent rect. 5 15
660 141.98 wind 1.0 720 > th dose independent rect. 7 20
717 142.22 wind 1.0 720 < th dose independent rect. 5 10
723 142.24 wind 1.0 1440 > th dose independent rect. 5 10
726 142.24 wind 1.0 720 > th dose independent rect. 5 20
728 142.24 wind 1.0 1440 < th dose dependent rect. 12 13
737 142.32 wind 1.0 720 > th dose independent rect. 5 22
841 142.63 precipitation 0.1 4320 < th dose independent rect. 3 13
845 142.63 precipitation 0.1 4320 < th dose dependent rect. 3 13
860 142.67 precipitation 0.1 4320 > th dose independent rect. 3 13
881 142.74 temperature 30.0 30 < th dose independent rect. 15 1
898 142.77 wind 1.0 720 < th dose independent rect. 22 17
939 142.94 wind 1.0 720 > th dose independent rect. 22 22