Os01g0721700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0721700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.62 | 0.582 | 7.84 | -1.21 | 0.439 | 1.2 | 0.0846 | -2.12 | -0.893 | 18.8 | -3.98 | 44 | -- | -- |
| 161.9 | 0.593 | 7.85 | -1.25 | 0.469 | 1.5 | 1.02 | -- | -0.911 | 20.8 | -37.29 | 44 | -- | -- |
| 153.64 | 0.577 | 7.84 | -1.21 | 0.44 | 1.21 | -- | -2.14 | -0.893 | 18.9 | -4.287 | 43 | -- | -- |
| 164.47 | 0.597 | 7.85 | -1.28 | 0.448 | 1.31 | -- | -- | -0.902 | 19.4 | -10.19 | 43 | -- | -- |
| 163.61 | 0.596 | 7.83 | -1.23 | -- | 1.13 | -- | -2.14 | -0.9 | -- | -5.993 | 43 | -- | -- |
| 181.92 | 0.632 | 7.82 | -1.25 | 0.762 | -- | -0.937 | -- | -0.859 | 14.4 | -- | -- | -- | -- |
| 185 | 0.637 | 7.83 | -1.28 | 0.764 | -- | -- | -- | -0.864 | 14.7 | -- | -- | -- | -- |
| 174.46 | 0.615 | 7.84 | -1.29 | -- | 1.19 | -- | -- | -0.907 | -- | -5.785 | 47 | -- | -- |
| 207.49 | 0.671 | 7.81 | -- | 0.458 | 1.31 | -- | -- | -0.76 | 19.2 | -10.33 | 43 | -- | -- |
| 219.12 | 0.692 | 7.83 | -1.31 | -- | -- | -- | -- | -0.883 | -- | -- | -- | -- | -- |
| 228.12 | 0.707 | 7.79 | -- | 0.789 | -- | -- | -- | -0.721 | 14.7 | -- | -- | -- | -- |
| 218.12 | 0.688 | 7.8 | -- | -- | 1.22 | -- | -- | -0.764 | -- | -3.862 | 49 | -- | -- |
| 264.5 | 0.759 | 7.8 | -- | -- | -- | -- | -- | -0.738 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.68 | humidity | 70 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 2 | 145.76 | humidity | 70 | 43200 | > th | dose dependent | rect. | 2 | 16 |
| 6 | 146.35 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 10 | 146.59 | humidity | 70 | 43200 | > th | dose dependent | sin | 2 | NA |
| 15 | 147.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 19 | 147.60 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 20 | 147.61 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 24 | 147.67 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 29 | 147.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 17 |
| 52 | 148.24 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 69 | 148.54 | humidity | 80 | 43200 | > th | dose independent | sin | 2 | NA |
| 73 | 148.70 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 80 | 148.89 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 14 |
| 83 | 148.93 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 93 | 149.00 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 98 | 149.08 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 108 | 149.17 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 109 | 149.17 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 112 | 149.21 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 113 | 149.21 | humidity | 80 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 114 | 149.22 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 124 | 149.28 | humidity | 80 | 43200 | < th | dose independent | sin | 1 | NA |
| 128 | 149.28 | humidity | 80 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 176 | 149.62 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 187 | 149.72 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 212 | 149.95 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 230 | 150.08 | humidity | 70 | 43200 | > th | dose dependent | sin | 19 | NA |
| 269 | 150.45 | radiation | 40 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 285 | 150.59 | humidity | 80 | 43200 | > th | dose dependent | sin | 16 | NA |
| 291 | 150.65 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 14 |
| 296 | 150.68 | radiation | 40 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 332 | 151.04 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 348 | 151.21 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 368 | 151.38 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 376 | 151.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 397 | 151.61 | humidity | 80 | 43200 | > th | dose independent | sin | 19 | NA |
| 399 | 151.66 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 408 | 151.72 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 417 | 151.75 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 419 | 151.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 436 | 151.90 | humidity | 80 | 43200 | < th | dose independent | sin | 19 | NA |
| 439 | 151.92 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 486 | 152.19 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 513 | 152.30 | radiation | 40 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 568 | 152.58 | temperature | 15 | 43200 | > th | dose independent | sin | 6 | NA |
| 589 | 152.66 | radiation | 40 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 594 | 152.68 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 609 | 152.71 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 612 | 152.72 | temperature | 20 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 653 | 152.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 6 |
| 667 | 152.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 6 |
| 695 | 153.02 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 8 |
| 708 | 153.07 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 715 | 153.08 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 17 |
| 722 | 153.10 | temperature | 20 | 43200 | < th | dose dependent | rect. | 8 | 10 |
| 726 | 153.11 | temperature | 20 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 850 | 153.33 | temperature | 15 | 43200 | < th | dose independent | sin | 7 | NA |
| 862 | 153.34 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 868 | 153.35 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 873 | 153.36 | temperature | 15 | 43200 | < th | dose dependent | sin | 5 | NA |