Os01g0721100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0721100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.92 | 0.484 | 6.01 | 0.617 | 0.369 | -0.885 | -0.285 | -0.99 | 0.399 | 3.9 | 21.9 | 1341 | -- | -- |
| 108.23 | 0.485 | 6.03 | 0.326 | 0.44 | -0.828 | 0.102 | -- | 0.371 | 4.03 | 21.8 | 1856 | -- | -- |
| 105.77 | 0.479 | 6.01 | 0.571 | 0.377 | -0.933 | -- | -0.985 | 0.397 | 3.76 | 21.8 | 1359 | -- | -- |
| 107.77 | 0.484 | 6.04 | 0.216 | 0.443 | -0.918 | -- | -- | 0.317 | 4.15 | 21.66 | 1886 | -- | -- |
| 112.92 | 0.495 | 6.02 | 0.554 | -- | -0.963 | -- | -0.929 | 0.392 | -- | 21.75 | 1237 | -- | -- |
| 133.59 | 0.542 | 5.98 | 0.637 | 0.419 | -- | -0.25 | -- | 0.6 | 3.72 | -- | -- | -- | -- |
| 133.78 | 0.542 | 5.98 | 0.641 | 0.419 | -- | -- | -- | 0.601 | 3.77 | -- | -- | -- | -- |
| 114.71 | 0.499 | 6.05 | 0.331 | -- | -0.875 | -- | -- | 0.333 | -- | 21.91 | 1139 | -- | -- |
| 108.85 | 0.486 | 6.05 | -- | 0.427 | -1.01 | -- | -- | 0.283 | 4.14 | 21.5 | 1899 | -- | -- |
| 143.44 | 0.56 | 5.98 | 0.658 | -- | -- | -- | -- | 0.613 | -- | -- | -- | -- | -- |
| 144.59 | 0.562 | 6 | -- | 0.431 | -- | -- | -- | 0.53 | 3.76 | -- | -- | -- | -- |
| 116.96 | 0.504 | 6.04 | -- | -- | -0.949 | -- | -- | 0.333 | -- | 21.74 | 1149 | -- | -- |
| 154.86 | 0.581 | 6 | -- | -- | -- | -- | -- | 0.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 6 | 106.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 14 |
| 39 | 106.95 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 69 | 107.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 91 | 107.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 95 | 107.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 105 | 107.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 124 | 107.65 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 8 |
| 150 | 107.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 168 | 107.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 194 | 107.85 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 246 | 107.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 391 | 108.33 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 400 | 108.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 436 | 108.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 676 | 109.08 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 927 | 109.75 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 929 | 109.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 955 | 109.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 956 | 109.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |