Os01g0720900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0720900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.06 | 0.583 | 4.9 | -0.485 | 0.56 | -1.44 | -0.499 | -0.486 | -0.138 | 3.5 | 22.5 | 2148 | -- | -- |
| 154.29 | 0.579 | 4.91 | -0.708 | 0.58 | -1.5 | -0.424 | -- | -0.157 | 3.52 | 22.2 | 2097 | -- | -- |
| 154.38 | 0.579 | 4.9 | -0.451 | 0.567 | -1.48 | -- | -0.604 | -0.106 | 3.34 | 22.3 | 2098 | -- | -- |
| 154.83 | 0.58 | 4.92 | -0.701 | 0.582 | -1.5 | -- | -- | -0.165 | 3.44 | 22.18 | 2079 | -- | -- |
| 170.91 | 0.609 | 4.91 | -0.537 | -- | -1.55 | -- | -0.459 | -0.133 | -- | 22.2 | 2383 | -- | -- |
| 233.72 | 0.717 | 4.8 | -0.0895 | 0.622 | -- | -0.491 | -- | 0.348 | 2.88 | -- | -- | -- | -- |
| 234.53 | 0.717 | 4.8 | -0.0781 | 0.619 | -- | -- | -- | 0.351 | 2.81 | -- | -- | -- | -- |
| 171.27 | 0.61 | 4.93 | -0.675 | -- | -1.51 | -- | -- | -0.198 | -- | 22.44 | 2420 | -- | -- |
| 165.24 | 0.599 | 4.89 | -- | 0.56 | -1.28 | -- | -- | -0.0531 | 3.39 | 22.4 | 2112 | -- | -- |
| 256.75 | 0.749 | 4.8 | -0.0517 | -- | -- | -- | -- | 0.367 | -- | -- | -- | -- | -- |
| 234.69 | 0.717 | 4.8 | -- | 0.618 | -- | -- | -- | 0.36 | 2.81 | -- | -- | -- | -- |
| 181.39 | 0.627 | 4.9 | -- | -- | -1.33 | -- | -- | -0.0692 | -- | 22.56 | 2273 | -- | -- |
| 256.82 | 0.748 | 4.8 | -- | -- | -- | -- | -- | 0.373 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 2 | 153.57 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 5 | 153.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 7 | 153.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 10 | 154.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 39 | 155.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 51 | 155.33 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 99 | 156.19 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 103 | 156.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 112 | 156.33 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 131 | 156.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 142 | 156.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 202 | 156.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 294 | 157.26 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 320 | 157.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 388 | 157.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 402 | 157.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 636 | 158.89 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 718 | 159.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 742 | 159.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 827 | 159.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 855 | 159.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 963 | 160.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 23 |