Os01g0720200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0720200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.76 | 0.187 | 12.3 | -1.05 | 0.372 | 0.595 | 0.341 | 0.318 | -0.271 | 6.08 | 23.25 | 602 | -- | -- |
| 15.8 | 0.185 | 12.3 | -1.11 | 0.375 | 0.612 | 0.273 | -- | -0.289 | 6 | 23.15 | 593 | -- | -- |
| 16 | 0.186 | 12.3 | -1.08 | 0.374 | 0.595 | -- | 0.153 | -0.282 | 5.89 | 22.82 | 590 | -- | -- |
| 15.97 | 0.186 | 12.3 | -1.11 | 0.369 | 0.606 | -- | -- | -0.295 | 5.96 | 22.76 | 593 | -- | -- |
| 17.44 | 0.194 | 12.3 | -1.13 | -- | 0.427 | -- | -0.0684 | -0.239 | -- | 25.92 | 2580 | -- | -- |
| 23.19 | 0.226 | 12.3 | -0.971 | 0.156 | -- | 0.00314 | -- | -0.201 | 4.13 | -- | -- | -- | -- |
| 23.19 | 0.225 | 12.3 | -0.971 | 0.156 | -- | -- | -- | -0.201 | 4.13 | -- | -- | -- | -- |
| 17.23 | 0.193 | 12.3 | -1.11 | -- | 0.433 | -- | -- | -0.258 | -- | 24.87 | 1199 | -- | -- |
| 45.89 | 0.316 | 12.3 | -- | 0.232 | 0.338 | -- | -- | -0.0785 | 5.35 | 27.99 | 693 | -- | -- |
| 24.51 | 0.231 | 12.3 | -0.965 | -- | -- | -- | -- | -0.197 | -- | -- | -- | -- | -- |
| 48.05 | 0.324 | 12.3 | -- | 0.138 | -- | -- | -- | -0.0931 | 4.25 | -- | -- | -- | -- |
| 46.55 | 0.318 | 12.3 | -- | -- | 0.246 | -- | -- | -0.0385 | -- | 30.6 | 2607 | -- | -- |
| 49.07 | 0.327 | 12.3 | -- | -- | -- | -- | -- | -0.0901 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 15 |
| 7 | 14.04 | temperature | 10 | 10 | > th | dose dependent | sin | 14 | NA |
| 17 | 14.24 | temperature | 10 | 270 | > th | dose dependent | sin | 17 | NA |
| 18 | 14.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 12 |
| 26 | 14.28 | temperature | 30 | 270 | < th | dose dependent | sin | 17 | NA |
| 27 | 14.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 38 | 14.38 | temperature | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 50 | 14.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 17 |
| 70 | 14.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 10 |
| 129 | 14.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 215 | 15.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 219 | 15.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 17 |
| 323 | 15.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 463 | 15.68 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 479 | 15.70 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 571 | 15.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 588 | 15.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 15 |
| 593 | 15.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 616 | 15.86 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 624 | 15.86 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 642 | 15.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 653 | 15.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 664 | 15.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 679 | 15.91 | temperature | 25 | 270 | > th | dose independent | rect. | 12 | 10 |
| 694 | 15.92 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 701 | 15.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 721 | 15.94 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 731 | 15.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 767 | 15.95 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 771 | 15.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 786 | 15.96 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 837 | 15.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 970 | 16.05 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 976 | 16.05 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 6 | 20 |