Os01g0719800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0719800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 426.8 | 0.971 | 4.14 | -1.04 | 1.33 | 1.08 | -0.998 | -0.568 | -1.21 | 6.16 | 22.12 | 1358 | -- | -- |
| 427.02 | 0.962 | 4.12 | -0.856 | 1.33 | 1.04 | -0.992 | -- | -1.16 | 6.18 | 21.93 | 1337 | -- | -- |
| 429.2 | 0.965 | 4.14 | -1.07 | 1.32 | 1.09 | -- | -0.642 | -1.21 | 6.23 | 22.09 | 1332 | -- | -- |
| 429.49 | 0.965 | 4.11 | -0.874 | 1.32 | 1.05 | -- | -- | -1.16 | 6.22 | 21.93 | 1331 | -- | -- |
| 518.75 | 1.06 | 4.16 | -1.06 | -- | 1.21 | -- | -0.612 | -1.2 | -- | 22.43 | 1319 | -- | -- |
| 465.12 | 1.01 | 4.06 | -0.503 | 1.39 | -- | -0.917 | -- | -0.928 | 5.9 | -- | -- | -- | -- |
| 467.18 | 1.01 | 4.06 | -0.51 | 1.39 | -- | -- | -- | -0.924 | 5.9 | -- | -- | -- | -- |
| 518.9 | 1.06 | 4.14 | -0.869 | -- | 1.16 | -- | -- | -1.15 | -- | 22.35 | 1318 | -- | -- |
| 447.7 | 0.985 | 4.08 | -- | 1.32 | 0.839 | -- | -- | -1.01 | 6.23 | 22.26 | 1300 | -- | -- |
| 567.01 | 1.11 | 4.08 | -0.468 | -- | -- | -- | -- | -0.892 | -- | -- | -- | -- | -- |
| 474.03 | 1.02 | 4.05 | -- | 1.38 | -- | -- | -- | -0.867 | 5.92 | -- | -- | -- | -- |
| 537.1 | 1.08 | 4.1 | -- | -- | 0.946 | -- | -- | -0.959 | -- | 24.05 | 1313 | -- | -- |
| 572.78 | 1.12 | 4.07 | -- | -- | -- | -- | -- | -0.84 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 422.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 4 | 422.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 108 | 425.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 227 | 426.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 502 | 427.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 601 | 427.90 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 748 | 428.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 783 | 428.74 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 819 | 428.89 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 820 | 428.89 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 823 | 428.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |