Os01g0718500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0718500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 798.59 | 1.33 | 4.12 | 1.12 | 1.36 | 6.68 | 0.873 | 12.5 | 1.56 | 8.33 | 5.887 | 2011 | -- | -- |
| 839.86 | 1.35 | 3.93 | 0.839 | 1.38 | 4.61 | 0.372 | -- | 1.76 | 8.39 | 5.9 | 2008 | -- | -- |
| 800.64 | 1.32 | 4.11 | 1.17 | 1.33 | 6.8 | -- | 13 | 1.63 | 8.28 | 6 | 2011 | -- | -- |
| 838.97 | 1.35 | 3.93 | 0.836 | 1.29 | 4.55 | -- | -- | 1.71 | 8.22 | 5.899 | 2011 | -- | -- |
| 881.62 | 1.38 | 4.16 | 1.21 | -- | 6.23 | -- | 13.6 | 1.71 | -- | 6.3 | 2515 | -- | -- |
| 1056.35 | 1.52 | 4 | -0.227 | 0.959 | -- | 0.901 | -- | 1.45 | 7.73 | -- | -- | -- | -- |
| 1058.48 | 1.52 | 4 | -0.206 | 0.965 | -- | -- | -- | 1.45 | 7.51 | -- | -- | -- | -- |
| 922.24 | 1.41 | 3.97 | 0.676 | -- | 3.78 | -- | -- | 1.92 | -- | 6.118 | 2531 | -- | -- |
| 855.47 | 1.36 | 3.94 | -- | 1.37 | 4.22 | -- | -- | 1.62 | 8.14 | 5.9 | 2011 | -- | -- |
| 1108.31 | 1.56 | 4.03 | -0.192 | -- | -- | -- | -- | 1.47 | -- | -- | -- | -- | -- |
| 1059.6 | 1.52 | 4 | -- | 0.963 | -- | -- | -- | 1.47 | 7.52 | -- | -- | -- | -- |
| 933.23 | 1.42 | 3.96 | -- | -- | 3.36 | -- | -- | 1.7 | -- | 6.2 | 2553 | -- | -- |
| 1109.28 | 1.55 | 4.02 | -- | -- | -- | -- | -- | 1.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 803.95 | wind | 5 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 3 | 816.50 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 5 | 818.58 | wind | 7 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 8 | 826.02 | wind | 7 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 9 | 827.97 | wind | 7 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 11 | 829.03 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 24 | 833.94 | wind | 7 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 31 | 836.06 | wind | 7 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 33 | 836.57 | wind | 5 | 1440 | > th | dose independent | rect. | 20 | 20 |
| 34 | 836.79 | wind | 7 | 1440 | > th | dose independent | rect. | 3 | 7 |
| 35 | 837.23 | wind | 7 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 40 | 837.58 | wind | 7 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 41 | 837.80 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 42 | 837.96 | wind | 7 | 4320 | < th | dose independent | rect. | 21 | 6 |
| 47 | 838.72 | wind | 5 | 1440 | > th | dose dependent | sin | 8 | NA |
| 48 | 838.78 | wind | 5 | 1440 | > th | dose dependent | rect. | 17 | 17 |
| 50 | 838.86 | wind | 5 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 55 | 839.42 | wind | 5 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 64 | 839.93 | wind | 5 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 82 | 841.14 | wind | 5 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 104 | 842.57 | wind | 5 | 1440 | > th | dose dependent | rect. | 15 | 22 |
| 145 | 844.95 | wind | 5 | 4320 | > th | dose dependent | sin | 11 | NA |
| 148 | 845.22 | wind | 5 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 154 | 845.44 | wind | 5 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 162 | 846.13 | wind | 5 | 4320 | > th | dose independent | sin | 11 | NA |
| 175 | 846.64 | wind | 5 | 1440 | > th | dose independent | sin | 7 | NA |
| 208 | 847.79 | wind | 5 | 1440 | > th | dose dependent | rect. | 21 | 16 |
| 232 | 849.31 | wind | 5 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 234 | 849.32 | wind | 5 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 236 | 849.34 | wind | 5 | 1440 | < th | dose independent | sin | 7 | NA |
| 242 | 849.50 | wind | 5 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 243 | 849.52 | wind | 5 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 252 | 849.95 | wind | 5 | 1440 | > th | dose dependent | no | NA | NA |
| 272 | 850.54 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 297 | 851.17 | wind | 5 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 306 | 851.74 | wind | 5 | 4320 | < th | dose independent | sin | 11 | NA |
| 307 | 851.74 | wind | 5 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 311 | 851.89 | wind | 5 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 316 | 852.03 | wind | 5 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 323 | 852.32 | wind | 5 | 1440 | > th | dose independent | no | NA | NA |
| 327 | 852.49 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 347 | 852.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 20 |
| 358 | 852.92 | wind | 5 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 371 | 853.35 | wind | 5 | 1440 | < th | dose independent | rect. | 12 | 23 |
| 382 | 853.51 | wind | 5 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 422 | 854.96 | wind | 5 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 432 | 855.19 | wind | 5 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 433 | 855.19 | wind | 5 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 438 | 855.25 | wind | 5 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 449 | 855.58 | wind | 5 | 1440 | < th | dose independent | no | NA | NA |
| 491 | 856.70 | wind | 5 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 495 | 856.80 | wind | 5 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 504 | 857.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 546 | 858.28 | wind | 5 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 574 | 859.00 | wind | 5 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 575 | 859.00 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 592 | 859.45 | wind | 9 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 671 | 861.08 | wind | 5 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 678 | 861.21 | wind | 9 | 4320 | > th | dose dependent | rect. | 19 | 4 |
| 755 | 862.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 775 | 863.08 | wind | 9 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 777 | 863.08 | wind | 9 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 862 | 864.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 997 | 867.90 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 2 |