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Os01g0716800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Endonuclease/exonuclease/phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0279) R2 : 0.427
β1 : -0.967 (0.102) R2dD : 0.125 R2D : -0.0515
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.05 (0.0949) R2dE : 0.155 R2E : -0.0293
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.939 (0.0604) R2dN8 : 0.406 R2N8 : 0.159
σ : 0.519
deviance : 124.2
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 19.99
memory length : 1022
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.84 0.497 11.6 -1.04 1.42 -1.28 -2.02 1.58 -0.872 23.9 16.16 189 -- --
114.6 0.499 11.5 -0.994 1.38 -1.26 -0.778 -- -0.863 23.9 17.26 190 -- --
122.48 0.515 11.6 -1.08 1.19 -0.928 -- 0.663 -0.869 22.9 19.75 169 -- --
115.9 0.501 11.5 -0.978 1.39 -1.28 -- -- -0.861 24 17.24 192 -- --
123.52 0.518 11.6 -1.21 -- -1.18 -- 2.36 -1.03 -- 24.47 2342 -- --
135.33 0.545 11.5 -0.919 0.575 -- -1.06 -- -0.787 19.7 -- -- -- --
138.48 0.551 11.5 -0.892 0.577 -- -- -- -0.788 19.5 -- -- -- --
124.2 0.519 11.5 -0.967 -- -1.05 -- -- -0.939 -- 19.99 1022 -- --
140.27 0.552 11.5 -- 1.47 -1.28 -- -- -0.761 23.8 14.39 172 -- --
156.28 0.584 11.5 -0.901 -- -- -- -- -0.797 -- -- -- -- --
159.44 0.591 11.5 -- 0.585 -- -- -- -0.689 19.4 -- -- -- --
149.82 0.57 11.5 -- -- -0.946 -- -- -0.809 -- 20 1006 -- --
177.68 0.622 11.5 -- -- -- -- -- -0.697 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 99.51 radiation 10.0 90 < th dose dependent rect. 5 18
3 102.53 humidity 50.0 30 > th dose dependent rect. 5 17
4 102.98 humidity 50.0 90 > th dose dependent rect. 4 19
7 103.44 radiation 1.0 90 < th dose independent rect. 5 18
10 103.67 radiation 10.0 270 < th dose dependent rect. 3 18
20 104.65 radiation 1.0 270 < th dose independent rect. 4 16
34 105.52 radiation 1.0 270 < th dose independent rect. 3 18
52 106.74 radiation 1.0 270 > th dose independent rect. 7 10
70 107.20 radiation 1.0 270 < th dose independent sin 0 NA
76 107.47 radiation 1.0 270 < th dose dependent sin 0 NA
84 107.68 humidity 50.0 270 > th dose dependent rect. 2 20
86 107.77 humidity 50.0 30 > th dose dependent rect. 5 10
95 108.07 humidity 90.0 90 < th dose dependent rect. 22 20
130 108.90 radiation 30.0 270 < th dose dependent rect. 17 14
132 108.93 radiation 10.0 90 < th dose dependent rect. 10 13
139 109.08 humidity 60.0 90 > th dose independent rect. 4 19
146 109.20 radiation 1.0 90 < th dose dependent sin 21 NA
158 109.36 radiation 20.0 90 < th dose dependent rect. 3 23
195 109.87 radiation 1.0 270 > th dose independent sin 0 NA
213 110.06 humidity 50.0 90 > th dose dependent rect. 3 23
214 110.10 radiation 1.0 90 < th dose independent sin 21 NA
217 110.17 radiation 20.0 270 < th dose independent rect. 17 14
236 110.47 precipitation 0.1 270 < th dose independent rect. 7 10
238 110.47 precipitation 0.1 270 < th dose dependent rect. 7 10
246 110.59 wind 9.0 270 < th dose independent rect. 17 14
247 110.62 humidity 90.0 90 < th dose dependent rect. 7 11
274 110.97 temperature 10.0 270 > th dose independent rect. 7 10
275 110.97 atmosphere 1015.0 270 < th dose independent rect. 7 10
276 110.97 temperature 10.0 270 > th dose independent rect. 17 14
279 110.98 humidity 80.0 30 > th dose independent rect. 5 17
285 111.02 radiation 20.0 270 < th dose dependent rect. 10 22
330 111.40 humidity 50.0 270 > th dose independent rect. 17 14
335 111.46 radiation 1.0 90 < th dose independent rect. 12 11
336 111.46 radiation 1.0 90 < th dose independent rect. 9 14
338 111.46 radiation 20.0 90 < th dose dependent rect. 5 10
357 111.59 radiation 1.0 90 > th dose independent sin 21 NA
459 112.24 humidity 90.0 270 < th dose independent rect. 21 20
500 112.46 radiation 10.0 1440 > th dose independent rect. 11 1
505 112.48 atmosphere 995.0 270 > th dose independent rect. 17 14
520 112.53 radiation 20.0 90 < th dose dependent rect. 18 23
536 112.62 precipitation 0.1 270 < th dose independent rect. 21 20
538 112.62 precipitation 0.1 270 < th dose dependent rect. 21 20
636 113.09 radiation 30.0 270 < th dose independent rect. 12 10
640 113.11 wind 9.0 270 < th dose independent rect. 7 10
647 113.15 temperature 10.0 270 > th dose dependent rect. 18 2
685 113.30 wind 9.0 270 < th dose dependent rect. 18 2
692 113.34 temperature 20.0 270 > th dose independent rect. 17 4
701 113.37 precipitation 0.1 270 < th dose independent rect. 22 18
703 113.37 precipitation 0.1 270 < th dose dependent rect. 22 18
722 113.44 atmosphere 1005.0 270 > th dose independent rect. 23 2
723 113.44 atmosphere 1005.0 270 > th dose independent rect. 22 4
727 113.45 radiation 40.0 1440 < th dose dependent rect. 23 6
742 113.51 radiation 10.0 270 < th dose dependent rect. 15 23
743 113.52 temperature 20.0 270 > th dose independent rect. 18 2
748 113.55 wind 7.0 270 < th dose independent rect. 18 2
755 113.59 humidity 50.0 90 > th dose dependent rect. 18 15
771 113.64 wind 9.0 270 < th dose dependent rect. 17 4
822 113.81 radiation 10.0 1440 < th dose dependent rect. 11 3
830 113.85 temperature 15.0 270 > th dose independent rect. 21 20
840 113.89 humidity 50.0 90 > th dose dependent rect. 17 22
844 113.91 atmosphere 995.0 30 > th dose independent rect. 5 17
850 113.92 temperature 10.0 270 > th dose independent rect. 18 2
851 113.92 humidity 50.0 270 > th dose independent rect. 18 2
852 113.92 atmosphere 1015.0 270 < th dose independent rect. 18 2
853 113.92 radiation 20.0 270 < th dose independent rect. 18 2
856 113.92 temperature 10.0 270 > th dose independent rect. 20 22
873 113.97 radiation 10.0 270 < th dose independent rect. 15 17
874 113.97 radiation 40.0 270 < th dose dependent rect. 18 2
876 113.97 radiation 20.0 90 < th dose dependent rect. 18 21
877 113.98 radiation 20.0 90 < th dose independent rect. 4 10
901 114.01 precipitation 0.1 270 < th dose independent rect. 17 14
903 114.01 precipitation 0.1 270 < th dose dependent rect. 17 14
907 114.03 wind 1.0 90 > th dose independent rect. 23 5
936 114.11 temperature 10.0 270 > th dose dependent rect. 17 4
939 114.12 wind 9.0 270 < th dose independent rect. 17 4
949 114.15 temperature 10.0 270 > th dose independent rect. 17 4
950 114.15 radiation 20.0 270 < th dose independent rect. 17 4
962 114.19 atmosphere 995.0 270 > th dose independent rect. 18 2
963 114.19 humidity 60.0 270 > th dose independent rect. 2 11
971 114.22 temperature 10.0 1440 > th dose independent rect. 23 7
974 114.22 temperature 30.0 1440 < th dose independent rect. 23 7
978 114.22 humidity 50.0 1440 > th dose independent rect. 23 7
987 114.22 atmosphere 995.0 1440 > th dose independent rect. 23 7
988 114.22 radiation 20.0 1440 < th dose independent rect. 23 7
998 114.22 temperature 10.0 1440 > th dose independent rect. 6 17