Os01g0716400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Violaxanthin de-epoxidase family protein.
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Os01g0716400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Violaxanthin de-epoxidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.62 | 0.414 | 10.4 | -0.589 | 0.855 | -1.06 | 0.262 | -0.28 | -0.628 | 9.43 | 22.83 | 42 | -- | -- |
| 77.78 | 0.411 | 10.4 | -0.593 | 0.863 | -1.05 | 0.51 | -- | -0.626 | 9.5 | 22.71 | 41 | -- | -- |
| 77.75 | 0.411 | 10.4 | -0.575 | 0.845 | -1.07 | -- | -0.421 | -0.621 | 9.33 | 22.78 | 41 | -- | -- |
| 78.73 | 0.413 | 10.4 | -0.574 | 0.839 | -1.08 | -- | -- | -0.629 | 9.37 | 22.71 | 41 | -- | -- |
| 92.73 | 0.451 | 10.4 | -0.58 | -- | -1.5 | -- | -0.284 | -0.562 | -- | 16.53 | 23 | -- | -- |
| 96.78 | 0.461 | 10.4 | -0.559 | 1.77 | -- | 0.602 | -- | -0.557 | 11 | -- | -- | -- | -- |
| 98.31 | 0.464 | 10.4 | -0.535 | 1.76 | -- | -- | -- | -0.555 | 11 | -- | -- | -- | -- |
| 92.92 | 0.449 | 10.4 | -0.561 | -- | -1.5 | -- | -- | -0.572 | -- | 14.92 | 8 | -- | -- |
| 87.38 | 0.435 | 10.4 | -- | 0.86 | -1.05 | -- | -- | -0.564 | 9.51 | 22.63 | 41 | -- | -- |
| 291.51 | 0.798 | 10.4 | -0.574 | -- | -- | -- | -- | -0.568 | -- | -- | -- | -- | -- |
| 105.84 | 0.481 | 10.3 | -- | 1.77 | -- | -- | -- | -0.496 | 11 | -- | -- | -- | -- |
| 100.68 | 0.467 | 10.4 | -- | -- | -1.48 | -- | -- | -0.515 | -- | 13.51 | 8 | -- | -- |
| 300.2 | 0.809 | 10.4 | -- | -- | -- | -- | -- | -0.505 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 2 | 71.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 3 | 72.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 14 | 73.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 15 | 73.24 | temperature | 20 | 10 | > th | dose dependent | sin | 3 | NA |
| 62 | 74.27 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 75 | 74.61 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 85 | 74.88 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 99 | 75.23 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 100 | 75.26 | humidity | 70 | 10 | > th | dose dependent | sin | 2 | NA |
| 101 | 75.28 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 128 | 75.62 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 131 | 75.66 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 20 |
| 144 | 75.84 | radiation | 10 | 90 | < th | dose dependent | sin | 1 | NA |
| 157 | 76.01 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 18 |
| 162 | 76.06 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 171 | 76.22 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 226 | 76.76 | radiation | 20 | 90 | < th | dose dependent | rect. | 12 | 22 |
| 239 | 76.85 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 253 | 76.96 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 18 |
| 257 | 77.00 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 16 |
| 302 | 77.29 | radiation | 10 | 90 | > th | dose independent | sin | 2 | NA |
| 322 | 77.41 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 22 |
| 345 | 77.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 346 | 77.59 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 363 | 77.68 | humidity | 70 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 427 | 77.96 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 22 |
| 435 | 77.99 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 448 | 78.09 | radiation | 1 | 270 | < th | dose independent | sin | 3 | NA |
| 456 | 78.11 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 481 | 78.19 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 485 | 78.20 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 486 | 78.20 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 511 | 78.28 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 14 |
| 532 | 78.34 | humidity | 80 | 10 | > th | dose independent | sin | 2 | NA |
| 534 | 78.34 | radiation | 10 | 90 | > th | dose independent | rect. | 15 | 23 |
| 535 | 78.35 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 536 | 78.36 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 548 | 78.40 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 557 | 78.44 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 574 | 78.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 621 | 78.64 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 17 |
| 622 | 78.64 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 639 | 78.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 684 | 78.80 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 690 | 78.82 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 730 | 78.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 750 | 78.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 765 | 78.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 777 | 79.02 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 10 |
| 794 | 79.06 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 795 | 79.06 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 12 |
| 919 | 79.17 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |