Os01g0716200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : IQ calmodulin-binding region domain containing protein.
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Os01g0716200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : IQ calmodulin-binding region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 332.37 | 0.857 | 4.07 | -2.73 | 0.537 | 2.14 | -1.84 | -4.64 | -0.781 | 21.5 | 25.31 | 1215 | -- | -- |
| 339.19 | 0.858 | 3.94 | -1.63 | 0.514 | 1.8 | -2.09 | -- | -0.557 | 21.4 | 24.84 | 1175 | -- | -- |
| 342.43 | 0.862 | 4.09 | -2.84 | 0.489 | 2.23 | -- | -5.47 | -0.87 | 23 | 24.84 | 1159 | -- | -- |
| 352.8 | 0.875 | 3.92 | -1.52 | 0.6 | 1.62 | -- | -- | -0.508 | 22.6 | 25.04 | 1222 | -- | -- |
| 351.84 | 0.874 | 4.11 | -3.03 | -- | 2.56 | -- | -6.42 | -0.956 | -- | 24.36 | 1060 | -- | -- |
| 437.89 | 0.981 | 3.9 | -1.05 | 0.845 | -- | -1.33 | -- | -0.338 | 23 | -- | -- | -- | -- |
| 444.43 | 0.987 | 3.89 | -1 | 0.857 | -- | -- | -- | -0.337 | 23.6 | -- | -- | -- | -- |
| 367.73 | 0.893 | 3.93 | -1.55 | -- | 1.96 | -- | -- | -0.572 | -- | 24.45 | 1076 | -- | -- |
| 405.66 | 0.938 | 3.85 | -- | 0.673 | 1.19 | -- | -- | -0.145 | 23 | 27.7 | 1231 | -- | -- |
| 490.53 | 1.03 | 3.87 | -0.979 | -- | -- | -- | -- | -0.327 | -- | -- | -- | -- | -- |
| 470.93 | 1.02 | 3.87 | -- | 0.846 | -- | -- | -- | -0.225 | 23.5 | -- | -- | -- | -- |
| 426.25 | 0.962 | 3.87 | -- | -- | 1.61 | -- | -- | -0.34 | -- | 24.9 | 1065 | -- | -- |
| 515.82 | 1.06 | 3.85 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 323.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 6 | 329.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 9 | 329.51 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 65 | 342.33 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 84 | 342.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 105 | 343.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 123 | 343.62 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 132 | 343.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 161 | 343.92 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 187 | 344.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 247 | 344.56 | humidity | 80 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 428 | 346.35 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 537 | 347.78 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 546 | 347.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 552 | 347.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 555 | 347.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 565 | 347.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 569 | 347.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 570 | 347.95 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 605 | 348.42 | temperature | 30 | 1440 | < th | dose independent | sin | 14 | NA |
| 636 | 348.73 | temperature | 30 | 1440 | > th | dose independent | sin | 14 | NA |
| 694 | 349.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 824 | 351.36 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 908 | 352.18 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |