FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0715900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0318) R2 : 0.722
β1 : 0.869 (0.116) R2dD : 0.0354 R2D : 0.0274
β2 : 2.77 (0.082) R2dC : 0.697 R2C : 0.687
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.142 (0.0677) R2dN8 : 0.00358 R2N8 : -0.0069
σ : 0.597
deviance : 162.37
__
_____
C
peak time of C : 19.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
127.18 0.53 4.08 1.05 2.46 0.642 1.51 3.34 0.214 19.4 30 332 -- --
133.58 0.538 4.08 1.05 2.46 0.642 2.18 -- 0.214 19.4 30 332 -- --
132.67 0.536 4.07 1.07 2.41 0.678 -- 4.04 0.22 19.4 29.71 363 -- --
140.22 0.552 4.08 1.05 2.46 1.31 -- -- 0.214 19.4 30 332 -- --
321.79 0.835 4.05 0.952 -- 2.25 -- 3.75 -0.0162 -- 28.49 506 -- --
149.61 0.573 4.13 0.914 2.76 -- 2.19 -- 0.137 19.2 -- -- -- --
162.37 0.597 4.13 0.869 2.77 -- -- -- 0.142 19.2 -- -- -- --
323.68 0.838 4.14 0.42 -- 2.48 -- -- -0.183 -- 28.5 516 -- --
148.02 0.567 4.12 -- 2.41 1.32 -- -- 0.185 19.4 30 370 -- --
566.87 1.11 4.07 0.819 -- -- -- -- 0.0938 -- -- -- -- --
182.28 0.632 4.15 -- 2.76 -- -- -- 0.045 19.2 -- -- -- --
327.62 0.843 4.14 -- -- 2.51 -- -- -0.215 -- 28.44 517 -- --
584.56 1.13 4.09 -- -- -- -- -- 0.00299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.23 temperature 15.0 30 > th dose dependent rect. 13 7
7 116.44 atmosphere 1015.0 10 < th dose dependent rect. 13 7
13 117.52 temperature 15.0 10 > th dose independent rect. 20 17
18 118.50 temperature 30.0 270 < th dose independent rect. 7 16
24 118.96 temperature 30.0 270 < th dose independent rect. 16 21
27 119.28 temperature 30.0 270 < th dose independent rect. 17 19
29 119.39 wind 7.0 30 < th dose independent rect. 13 7
31 119.59 temperature 30.0 270 < th dose independent rect. 7 18
57 120.49 temperature 10.0 270 > th dose dependent rect. 2 15
61 120.60 temperature 25.0 90 > th dose independent rect. 13 7
65 120.68 temperature 10.0 30 > th dose dependent rect. 4 16
66 120.69 temperature 25.0 10 > th dose independent rect. 13 7
78 120.85 precipitation 0.1 10 < th dose independent rect. 13 7
80 120.85 precipitation 0.1 10 < th dose dependent rect. 13 7
83 120.95 atmosphere 1015.0 10 < th dose independent rect. 20 17
97 121.39 temperature 10.0 10 > th dose independent rect. 13 7
99 121.39 atmosphere 1010.0 10 < th dose independent rect. 13 7
102 121.39 atmosphere 995.0 10 > th dose independent rect. 20 17
126 121.75 humidity 50.0 30 > th dose independent rect. 20 17
128 121.79 temperature 10.0 1440 > th dose independent rect. 14 7
131 121.79 temperature 10.0 1440 > th dose independent rect. 21 17
134 121.79 atmosphere 995.0 1440 > th dose independent rect. 21 17
135 121.80 wind 1.0 10 > th dose independent rect. 13 7
158 122.06 precipitation 0.1 30 < th dose independent rect. 20 17
160 122.06 precipitation 0.1 30 < th dose dependent rect. 20 17
170 122.25 wind 9.0 10 < th dose independent rect. 20 17
198 122.65 temperature 30.0 270 < th dose independent rect. 7 5
217 123.04 humidity 60.0 270 > th dose independent rect. 7 16
231 123.17 temperature 10.0 10 > th dose dependent rect. 2 18
235 123.24 temperature 10.0 270 > th dose dependent rect. 11 21
240 123.32 wind 7.0 270 < th dose independent rect. 11 21
272 123.68 humidity 60.0 270 > th dose independent rect. 7 18
288 123.86 wind 7.0 270 < th dose independent rect. 12 19
307 124.07 wind 7.0 270 < th dose independent rect. 2 15
308 124.07 temperature 15.0 270 > th dose independent rect. 18 18
353 124.47 temperature 10.0 90 > th dose dependent rect. 13 19
369 124.59 wind 9.0 90 < th dose dependent rect. 13 7
370 124.59 temperature 25.0 10 > th dose dependent rect. 13 19
386 124.69 radiation 40.0 270 < th dose independent rect. 7 5
387 124.71 humidity 60.0 270 > th dose independent rect. 7 6
398 124.76 humidity 60.0 270 > th dose independent rect. 17 19
439 125.03 temperature 30.0 270 < th dose independent rect. 16 10
449 125.10 radiation 40.0 270 < th dose independent rect. 8 3
476 125.19 radiation 10.0 270 < th dose independent rect. 16 10
503 125.28 temperature 15.0 270 > th dose independent rect. 17 9
538 125.46 radiation 40.0 270 < th dose dependent rect. 8 17
557 125.53 atmosphere 995.0 270 > th dose independent rect. 7 15
567 125.58 precipitation 0.1 270 < th dose independent rect. 12 19
569 125.58 precipitation 0.1 270 < th dose dependent rect. 12 19
583 125.68 humidity 50.0 270 > th dose dependent rect. 8 3
598 125.76 temperature 30.0 720 < th dose independent rect. 24 12
609 125.77 temperature 25.0 270 > th dose dependent sin 21 NA
620 125.81 atmosphere 1010.0 10 < th dose independent rect. 20 8
627 125.84 radiation 40.0 30 < th dose independent rect. 13 7
637 125.90 temperature 10.0 270 > th dose independent rect. 7 5
638 125.90 atmosphere 995.0 270 > th dose independent rect. 7 5
639 125.90 atmosphere 1015.0 270 < th dose independent rect. 7 5
640 125.90 temperature 10.0 270 > th dose independent rect. 12 19
641 125.90 radiation 20.0 270 < th dose dependent rect. 16 10
659 125.97 temperature 30.0 720 < th dose independent rect. 11 1
660 125.98 precipitation 0.1 270 < th dose independent rect. 7 5
661 125.98 precipitation 0.1 270 < th dose dependent rect. 7 5
665 126.01 wind 1.0 270 > th dose independent rect. 7 5
681 126.07 humidity 90.0 10 < th dose independent rect. 13 7
740 126.21 radiation 40.0 270 < th dose independent rect. 8 15
745 126.23 humidity 50.0 270 > th dose dependent rect. 7 5
746 126.23 temperature 15.0 10 > th dose dependent rect. 20 6
747 126.24 atmosphere 1015.0 270 < th dose independent rect. 7 15
769 126.34 humidity 90.0 270 < th dose independent rect. 12 6
772 126.36 radiation 40.0 270 < th dose independent rect. 8 17
779 126.39 wind 9.0 270 < th dose independent rect. 7 5
789 126.41 radiation 40.0 270 < th dose independent rect. 18 18
799 126.46 atmosphere 995.0 10 > th dose independent rect. 13 7
805 126.47 wind 1.0 270 > th dose independent rect. 8 3
810 126.48 precipitation 0.1 270 < th dose independent rect. 11 21
813 126.48 precipitation 0.1 270 < th dose dependent rect. 11 21
834 126.57 wind 5.0 270 < th dose independent rect. 22 9
874 126.66 temperature 15.0 270 > th dose independent rect. 8 15
883 126.70 temperature 30.0 270 < th dose independent sin 21 NA
884 126.70 atmosphere 1010.0 10 < th dose independent rect. 20 6
893 126.73 temperature 10.0 270 > th dose independent rect. 8 3
894 126.73 atmosphere 995.0 270 > th dose independent rect. 8 3
895 126.73 atmosphere 1015.0 270 < th dose independent rect. 8 3
896 126.73 temperature 10.0 270 > th dose independent rect. 11 21
920 126.80 precipitation 0.1 270 < th dose independent rect. 8 3
922 126.80 precipitation 0.1 270 < th dose dependent rect. 8 3
926 126.82 humidity 70.0 270 > th dose independent rect. 17 9
952 126.89 temperature 30.0 270 < th dose dependent rect. 8 13
955 126.90 radiation 1.0 270 > th dose independent rect. 12 18
988 126.98 atmosphere 1010.0 270 < th dose independent rect. 17 8
992 127.00 wind 9.0 270 < th dose independent rect. 8 3