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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0714800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WRKY transcription factor 26.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.057) R2 : 0.0469
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.13 (0.236) R2dE : 0.053 R2E : 0.0456
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.127) R2dN8 : 0.00128 R2N8 : -0.00617
σ : 1.05
deviance : 511.11
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.321
memory length : 5970
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
497.3 1.05 3 0.264 0.0384 1.08 -1.72 0.488 0.084 20.5 2.256 6277 -- --
497.48 1.04 3 0.34 0.0529 1.06 -1.76 -- 0.0966 20.2 2.253 6293 -- --
506.36 1.05 3 0.246 0.105 1.1 -- 0.924 0.0839 19.8 2.251 6298 -- --
505.76 1.05 3 0.408 0.202 1.17 -- -- 0.109 16.4 2.253 6290 -- --
506.7 1.05 3 0.281 -- 1.07 -- 0.739 0.0859 -- 2.26 6293 -- --
521.16 1.07 3.04 0.283 0.137 -- 1.81 -- -0.102 7.88 -- -- -- --
528.17 1.08 3.04 0.323 0.258 -- -- -- -0.109 4.32 -- -- -- --
505.98 1.05 3 0.436 -- 1.14 -- -- 0.134 -- 2.25 5938 -- --
510.1 1.05 3 -- 0.2 1.22 -- -- 0.0878 16.4 2.28 6293 -- --
531.75 1.08 3.04 0.333 -- -- -- -- -0.102 -- -- -- -- --
530.92 1.08 3.05 -- 0.264 -- -- -- -0.145 4.3 -- -- -- --
511.11 1.05 3 -- -- 1.13 -- -- 0.106 -- 2.321 5970 -- --
534.68 1.08 3.05 -- -- -- -- -- -0.139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 484.94 wind 5.0 90 > th dose dependent rect. 24 10
2 485.00 wind 5.0 90 > th dose dependent rect. 1 8
4 485.96 wind 5.0 90 > th dose dependent rect. 21 13
5 486.75 wind 7.0 90 > th dose independent rect. 21 13
6 486.93 wind 7.0 90 > th dose independent rect. 24 10
9 487.42 wind 7.0 10 > th dose dependent rect. 21 13
24 491.66 wind 5.0 90 > th dose dependent rect. 8 2
31 492.44 wind 5.0 90 > th dose dependent rect. 5 5
36 492.79 wind 7.0 90 > th dose independent rect. 7 3
47 493.25 wind 7.0 10 > th dose independent rect. 21 13
53 494.18 wind 7.0 10 > th dose dependent rect. 2 8
61 494.71 temperature 15.0 30 > th dose independent rect. 3 23
62 494.78 wind 7.0 10 < th dose independent rect. 3 23
67 495.04 wind 5.0 90 > th dose dependent sin 9 NA
70 495.23 temperature 20.0 10 > th dose independent rect. 2 1
74 495.37 wind 1.0 30 > th dose dependent rect. 2 1
76 495.51 precipitation 0.1 720 < th dose independent rect. 20 9
77 495.51 precipitation 0.1 720 < th dose dependent rect. 20 9
78 495.52 humidity 90.0 30 > th dose independent rect. 2 1
81 495.70 wind 7.0 10 > th dose dependent rect. 9 1
88 495.81 temperature 25.0 30 < th dose independent rect. 2 1
89 495.82 atmosphere 1000.0 30 > th dose independent rect. 2 1
95 495.95 humidity 80.0 30 > th dose dependent rect. 2 1
100 496.06 wind 9.0 43200 > th dose dependent rect. 16 7
101 496.13 atmosphere 1015.0 30 < th dose dependent rect. 2 1
102 496.14 wind 5.0 30 < th dose independent rect. 2 1
106 496.15 temperature 10.0 30 > th dose independent rect. 2 1
109 496.15 humidity 50.0 30 > th dose independent rect. 2 1
113 496.15 atmosphere 1010.0 30 < th dose independent rect. 2 1
115 496.15 radiation 1.0 30 < th dose independent rect. 2 1
120 496.15 precipitation 0.1 30 < th dose independent rect. 2 1
122 496.15 radiation 1.0 30 < th dose dependent rect. 2 1
127 496.15 precipitation 0.1 30 < th dose dependent rect. 2 1
129 496.18 wind 1.0 30 > th dose independent rect. 2 1
131 496.19 temperature 30.0 30 < th dose dependent rect. 2 1
134 496.23 temperature 10.0 30 > th dose dependent rect. 2 1
137 496.31 atmosphere 995.0 30 > th dose dependent rect. 2 1
138 496.34 wind 7.0 43200 > th dose dependent rect. 20 3
140 496.42 wind 9.0 43200 > th dose independent rect. 16 8
142 496.46 wind 9.0 30 < th dose dependent rect. 2 1
144 496.48 wind 9.0 43200 < th dose independent rect. 16 8
145 496.52 atmosphere 1000.0 720 > th dose dependent rect. 15 1
147 496.56 wind 3.0 1440 > th dose independent rect. 14 1
154 496.61 radiation 1.0 43200 < th dose dependent rect. 21 7
156 496.64 wind 7.0 43200 > th dose independent rect. 19 4
162 496.68 atmosphere 1005.0 720 > th dose independent rect. 15 3
170 496.81 precipitation 0.1 720 < th dose independent rect. 20 17
171 496.81 precipitation 0.1 720 < th dose dependent rect. 20 17
172 496.84 radiation 40.0 1440 < th dose dependent rect. 17 12
176 496.87 wind 7.0 43200 < th dose independent rect. 19 4
199 497.05 wind 7.0 10 > th dose independent sin 8 NA
203 497.09 wind 9.0 43200 > th dose independent rect. 16 13
204 497.10 wind 3.0 1440 > th dose independent rect. 13 3
229 497.29 wind 3.0 1440 < th dose independent rect. 13 3
232 497.31 radiation 10.0 1440 < th dose dependent rect. 17 12
241 497.39 radiation 40.0 1440 < th dose dependent rect. 17 4
248 497.42 radiation 40.0 1440 < th dose dependent rect. 17 7
250 497.45 wind 7.0 10 > th dose independent rect. 2 8
257 497.47 wind 3.0 1440 < th dose independent rect. 14 1
261 497.48 wind 7.0 10 > th dose independent rect. 9 1
292 497.49 wind 9.0 43200 > th dose dependent rect. 15 14
328 497.70 radiation 10.0 1440 < th dose dependent rect. 17 7
330 497.71 radiation 10.0 1440 < th dose dependent rect. 17 4
358 497.84 radiation 10.0 1440 < th dose dependent rect. 17 2
378 497.90 radiation 10.0 1440 < th dose dependent rect. 17 9
380 497.91 wind 9.0 30 > th dose dependent rect. 18 17
394 498.01 radiation 40.0 1440 < th dose dependent rect. 17 2
406 498.08 atmosphere 995.0 90 > th dose dependent rect. 14 13
411 498.10 temperature 10.0 720 > th dose dependent rect. 3 19
432 498.21 precipitation 0.1 10 < th dose independent rect. 3 23
433 498.21 precipitation 0.1 10 < th dose dependent rect. 3 23
451 498.29 wind 7.0 10 < th dose independent sin 9 NA
455 498.30 wind 1.0 90 > th dose dependent rect. 24 11
469 498.40 temperature 10.0 720 > th dose dependent rect. 3 17
482 498.46 radiation 1.0 1440 > th dose dependent rect. 17 12
486 498.53 wind 7.0 43200 > th dose independent rect. 19 11
487 498.55 precipitation 0.1 720 < th dose independent rect. 20 2
489 498.55 precipitation 0.1 720 < th dose dependent rect. 20 2
498 498.60 radiation 1.0 1440 > th dose dependent rect. 17 2
564 498.86 wind 7.0 43200 < th dose independent rect. 19 11
575 498.89 radiation 1.0 43200 < th dose dependent rect. 21 4
576 498.89 wind 7.0 720 > th dose dependent rect. 19 14
625 499.12 wind 9.0 43200 < th dose independent sin 14 NA
695 499.41 wind 9.0 43200 > th dose independent sin 14 NA
710 499.45 wind 9.0 43200 > th dose dependent rect. 17 1
717 499.48 wind 3.0 1440 < th dose dependent rect. 13 3
754 499.69 wind 7.0 43200 > th dose independent sin 11 NA
760 499.71 wind 9.0 43200 < th dose dependent rect. 21 1
780 499.80 wind 7.0 43200 > th dose independent rect. 18 16
785 499.82 wind 7.0 43200 < th dose independent sin 11 NA
792 499.86 wind 7.0 720 > th dose dependent rect. 19 3
796 499.87 wind 7.0 43200 < th dose independent rect. 18 16
799 499.89 humidity 90.0 90 < th dose independent rect. 2 1
823 499.96 wind 7.0 720 > th dose dependent rect. 19 7
843 500.02 wind 5.0 43200 > th dose dependent sin 11 NA
878 500.14 wind 5.0 43200 > th dose dependent rect. 17 19
901 500.22 wind 5.0 720 < th dose independent rect. 20 1
914 500.32 wind 9.0 43200 < th dose independent rect. 16 3
935 500.37 wind 7.0 720 > th dose independent rect. 19 7
939 500.38 wind 9.0 43200 > th dose dependent sin 15 NA
940 500.38 humidity 80.0 1440 < th dose dependent rect. 18 5
942 500.39 radiation 1.0 1440 < th dose independent rect. 18 11
943 500.39 temperature 10.0 720 > th dose dependent rect. 8 7
961 500.44 temperature 15.0 1440 > th dose independent rect. 11 14
970 500.46 temperature 15.0 720 > th dose dependent rect. 10 5