Os01g0713900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myosin.
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Os01g0713900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myosin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 211.95 | 0.684 | 5.62 | 0.894 | 1.06 | -1.45 | -0.135 | -4.52 | -0.0619 | 4.44 | 19.9 | 4960 | -- | -- |
| 236.72 | 0.722 | 5.77 | 0.578 | 1.1 | -0.194 | -0.125 | -- | -0.0991 | 4.22 | 19.9 | 4960 | -- | -- |
| 212 | 0.678 | 5.62 | 0.896 | 1.06 | -1.45 | -- | -4.52 | -0.0612 | 4.44 | 19.9 | 4959 | -- | -- |
| 229.98 | 0.706 | 5.8 | 0.396 | 1.06 | -0.583 | -- | -- | -0.218 | 4.46 | 24.71 | 3302 | -- | -- |
| 269.89 | 0.765 | 5.62 | 0.873 | -- | -1.52 | -- | -4.42 | -0.0701 | -- | 19.8 | 5562 | -- | -- |
| 238.14 | 0.723 | 5.76 | 0.625 | 1.06 | -- | -0.155 | -- | -0.0664 | 4.33 | -- | -- | -- | -- |
| 238.21 | 0.723 | 5.76 | 0.626 | 1.06 | -- | -- | -- | -0.0656 | 4.33 | -- | -- | -- | -- |
| 281.13 | 0.781 | 5.83 | 0.364 | -- | -0.701 | -- | -- | -0.298 | -- | 24 | 2728 | -- | -- |
| 234.06 | 0.713 | 5.82 | -- | 1.09 | -0.728 | -- | -- | -0.267 | 4.46 | 24.71 | 3302 | -- | -- |
| 298.87 | 0.808 | 5.77 | 0.668 | -- | -- | -- | -- | -0.0374 | -- | -- | -- | -- | -- |
| 248.54 | 0.737 | 5.78 | -- | 1.07 | -- | -- | -- | -0.135 | 4.31 | -- | -- | -- | -- |
| 283.35 | 0.784 | 5.84 | -- | -- | -0.962 | -- | -- | -0.347 | -- | 24.8 | 2758 | -- | -- |
| 310.64 | 0.823 | 5.79 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.66 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 205.87 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 3 | 207.87 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 4 | 208.31 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 5 | 209.09 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 10 | 210.56 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 11 | 210.56 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 12 | 210.67 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 14 | 210.75 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 16 | 210.82 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 17 | 210.86 | wind | 9.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 18 | 210.86 | temperature | 10.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 20 | 210.86 | temperature | 30.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 21 | 210.86 | humidity | 50.0 | 10 | > th | dose independent | rect. | 2 | 1 |
| 25 | 210.86 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 27 | 210.86 | radiation | 1.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 32 | 210.86 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 2 | 1 |
| 33 | 210.86 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 34 | 210.86 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 39 | 210.86 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 42 | 210.93 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 44 | 210.96 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 48 | 211.00 | wind | 5.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 50 | 211.00 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
| 81 | 211.09 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 85 | 211.12 | wind | 9.0 | 10 | < th | dose dependent | rect. | 2 | 1 |
| 98 | 211.21 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 137 | 211.54 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 149 | 211.68 | temperature | 20.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 193 | 212.08 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 23 |
| 194 | 212.08 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 266 | 212.50 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 267 | 212.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 270 | 212.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 274 | 212.50 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 283 | 212.50 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 284 | 212.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 305 | 212.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 320 | 212.54 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 354 | 212.73 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 422 | 213.06 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 22 |
| 439 | 213.14 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 502 | 213.39 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 3 |
| 505 | 213.39 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 554 | 213.53 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 577 | 213.62 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 21 |
| 583 | 213.63 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 601 | 213.67 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 602 | 213.67 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 607 | 213.68 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 20 |
| 667 | 213.78 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 700 | 213.85 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 777 | 214.13 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 2 | 2 |
| 848 | 214.33 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 960 | 214.63 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 963 | 214.63 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 23 |