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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0711200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.37 (0.053) R2 : 0.82
β1 : 2.78 (0.194) R2dD : 0.0844 R2D : 0.0195
β2 : 7.27 (0.169) R2dC : 1.19 R2C : 0.0578
β3 : -6.41 (0.195) R2dE : 0.709 R2E : -0.514
β4 : 3.98 (0.566) R2dD*C : 0.02 R2D*C : -0.0114
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.779 (0.113) R2dN8 : 0.0254 R2N8 : -0.0321
σ : 0.98
deviance : 442.61
__
_____
C
peak time of C : 8.13
E
wheather : temperature
threshold : 11.64
memory length : 408
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.3
open length of G : 7.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
437.76 0.983 4.43 2.39 6.69 -5.72 4.87 -3.24 0.703 8.26 14.24 404 22.3 7.42
442.61 0.98 4.37 2.78 7.27 -6.41 3.98 -- 0.779 8.13 11.64 408 22.3 7.6
496.19 1.04 4.43 2.89 6.63 -5.6 -- 0.122 0.726 8.31 13.68 400 22.3 7.4
490.72 1.03 4.38 2.85 7.19 -6.29 -- -- 0.758 8.12 11.62 401 22.3 7.72
1612.78 1.87 4.74 2.86 -- -3.32 -- 1.26 0.222 -- 7.84 33 21.5 8.4
773 1.3 4.61 2.19 4.92 -- 3.49 -- 0.202 11.1 -- -- -- --
824.79 1.34 4.6 2.33 4.9 -- -- -- 0.215 11.1 -- -- -- --
1534.22 1.82 4.69 2.6 -- -3.49 -- -- 0.4 -- 9.309 43 20.4 9.35
694.47 1.23 4.49 -- 6.69 -5.33 -- -- 0.351 8.36 10.43 371 22.7 7.33
2321.7 2.25 4.72 2.22 -- -- -- -- 0.175 -- -- -- -- --
968.42 1.46 4.66 -- 4.88 -- -- -- -0.0455 11 -- -- -- --
780.87 1.3 4.66 -- -- -5.66 -- -- 0.254 -- -11.75 401 12.6 14.8
2451.83 2.31 4.78 -- -- -- -- -- -0.0714 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 473.77 temperature 15.0 270 > th dose dependent rect. 24 6
2 475.31 temperature 15.0 270 > th dose dependent rect. 23 8
11 486.27 temperature 20.0 270 > th dose independent rect. 24 6
12 487.28 temperature 20.0 270 > th dose independent rect. 1 17
20 498.72 radiation 10.0 30 < th dose dependent sin 2 NA
27 504.55 radiation 1.0 90 > th dose independent rect. 6 9
32 505.98 temperature 20.0 270 > th dose independent rect. 13 17
41 513.48 wind 9.0 270 < th dose independent rect. 13 16
51 516.05 precipitation 0.1 270 < th dose independent rect. 5 8
52 516.05 precipitation 0.1 270 < th dose dependent rect. 5 8
53 516.24 wind 9.0 270 < th dose independent rect. 1 16
54 516.41 temperature 10.0 270 > th dose dependent rect. 24 18
57 517.66 temperature 10.0 270 > th dose independent rect. 5 8
58 517.66 atmosphere 995.0 270 > th dose independent rect. 5 8
59 517.66 atmosphere 1015.0 270 < th dose independent rect. 5 8
60 517.66 temperature 10.0 270 > th dose independent rect. 13 16
65 519.87 wind 9.0 270 < th dose independent rect. 5 8
69 521.01 radiation 40.0 270 < th dose dependent rect. 17 8
70 521.24 temperature 10.0 270 > th dose independent rect. 17 8
71 521.24 radiation 20.0 270 < th dose independent rect. 17 8
74 521.24 temperature 10.0 270 > th dose independent rect. 1 16
75 521.24 atmosphere 1015.0 270 < th dose independent rect. 1 16
77 521.36 humidity 50.0 270 > th dose independent rect. 17 8
83 523.36 wind 9.0 270 < th dose independent rect. 17 8
85 523.86 wind 1.0 270 > th dose independent rect. 5 8
89 524.29 precipitation 0.1 270 < th dose independent rect. 17 8
90 524.29 precipitation 0.1 270 < th dose dependent rect. 17 8
92 525.25 atmosphere 995.0 270 > th dose independent rect. 17 8
95 525.47 temperature 10.0 90 > th dose dependent rect. 15 15
96 525.58 temperature 10.0 270 > th dose dependent rect. 13 16
98 525.87 humidity 60.0 270 > th dose dependent rect. 24 6
102 526.95 temperature 20.0 90 > th dose independent rect. 15 15
105 527.51 radiation 1.0 10 > th dose independent rect. 6 9
114 528.30 humidity 80.0 270 > th dose independent rect. 24 6
128 528.88 wind 9.0 270 < th dose dependent rect. 24 6
152 531.63 atmosphere 1015.0 270 < th dose independent rect. 13 16
156 532.25 radiation 10.0 90 < th dose dependent rect. 3 14
163 533.02 temperature 10.0 10 > th dose dependent rect. 15 15
164 533.20 atmosphere 995.0 270 > th dose independent rect. 1 16
167 533.38 radiation 10.0 270 < th dose dependent rect. 24 7
171 534.14 precipitation 0.1 270 < th dose independent rect. 1 16
172 534.14 precipitation 0.1 270 < th dose dependent rect. 1 16
181 534.85 wind 9.0 90 < th dose independent rect. 15 15
184 535.15 radiation 10.0 270 < th dose independent rect. 24 6
207 536.34 precipitation 0.1 270 < th dose independent rect. 13 16
208 536.34 precipitation 0.1 270 < th dose dependent rect. 13 16
220 537.13 wind 3.0 270 < th dose independent rect. 24 6
247 538.26 radiation 10.0 270 < th dose dependent rect. 24 15
259 538.85 humidity 50.0 270 > th dose independent rect. 5 8
262 539.07 atmosphere 1015.0 270 < th dose independent rect. 24 6
265 539.10 temperature 10.0 90 > th dose independent rect. 15 15
268 539.17 temperature 10.0 270 > th dose independent rect. 24 6
270 539.17 temperature 30.0 270 < th dose independent rect. 24 6
271 539.17 humidity 50.0 270 > th dose independent rect. 24 6
274 539.17 atmosphere 995.0 270 > th dose independent rect. 24 6
278 539.17 temperature 10.0 270 > th dose independent rect. 6 18
279 539.18 wind 9.0 270 < th dose independent rect. 24 6
303 540.44 radiation 40.0 90 < th dose independent rect. 15 15
322 541.24 precipitation 0.1 270 < th dose independent rect. 19 16
323 541.24 precipitation 0.1 270 < th dose dependent rect. 19 16
328 542.00 wind 1.0 270 > th dose independent rect. 11 8
330 542.08 temperature 30.0 270 < th dose independent rect. 18 6
344 542.49 precipitation 0.1 270 < th dose independent rect. 6 18
345 542.49 precipitation 0.1 270 < th dose dependent rect. 6 18
350 542.87 wind 9.0 270 < th dose independent rect. 11 8
353 542.89 atmosphere 995.0 270 > th dose independent rect. 13 16
354 543.00 wind 1.0 270 > th dose independent rect. 17 8
364 543.68 radiation 20.0 10 < th dose dependent rect. 2 17
378 544.52 radiation 1.0 270 < th dose independent rect. 24 16
382 544.57 radiation 30.0 90 < th dose independent rect. 13 17
390 545.08 temperature 30.0 270 < th dose independent rect. 19 16
416 546.37 precipitation 0.1 270 < th dose independent rect. 24 6
417 546.37 precipitation 0.1 270 < th dose dependent rect. 24 6
421 546.77 wind 9.0 270 < th dose independent rect. 6 18
424 546.93 atmosphere 1015.0 90 < th dose independent rect. 15 15
438 547.50 temperature 10.0 270 > th dose independent rect. 11 8
439 547.50 atmosphere 1015.0 270 < th dose independent rect. 11 8
440 547.50 temperature 10.0 270 > th dose independent rect. 19 16
441 547.50 atmosphere 995.0 270 > th dose independent rect. 19 16
453 548.20 wind 9.0 270 < th dose independent rect. 19 16
480 549.41 precipitation 0.1 270 < th dose independent rect. 11 8
481 549.41 precipitation 0.1 270 < th dose dependent rect. 11 8
508 550.10 wind 9.0 10 < th dose independent rect. 15 15
517 550.37 humidity 50.0 270 > th dose independent rect. 19 16
567 551.91 precipitation 0.1 10 < th dose independent rect. 6 9
568 551.91 precipitation 0.1 10 < th dose dependent rect. 6 9
574 552.02 radiation 10.0 90 < th dose dependent rect. 3 7
590 552.42 precipitation 0.1 90 < th dose independent rect. 15 15
591 552.42 precipitation 0.1 90 < th dose dependent rect. 15 15
592 552.44 radiation 10.0 10 < th dose independent rect. 2 17
662 553.66 radiation 1.0 90 < th dose independent sin 2 NA
674 554.15 radiation 40.0 10 < th dose independent rect. 15 15
675 554.16 atmosphere 995.0 90 > th dose independent rect. 15 15
677 554.21 temperature 10.0 10 > th dose independent rect. 6 9
679 554.21 atmosphere 995.0 10 > th dose independent rect. 6 9
680 554.21 atmosphere 1015.0 10 < th dose independent rect. 6 9
681 554.21 temperature 10.0 10 > th dose independent rect. 15 15
711 555.44 atmosphere 1015.0 10 < th dose independent rect. 15 15
717 555.61 wind 1.0 270 > th dose independent rect. 19 16
726 556.10 radiation 1.0 90 > th dose independent sin 2 NA
727 556.10 radiation 40.0 10 < th dose dependent rect. 14 16
730 556.19 temperature 20.0 10 > th dose independent rect. 3 3
745 556.60 atmosphere 1015.0 270 < th dose dependent rect. 1 4
751 556.75 atmosphere 995.0 270 > th dose independent rect. 6 18
774 557.53 temperature 30.0 270 < th dose independent rect. 5 8
797 557.73 temperature 10.0 1440 > th dose independent rect. 7 9
800 557.73 temperature 10.0 1440 > th dose independent rect. 16 15
807 557.93 wind 9.0 10 < th dose independent rect. 6 9
887 559.38 temperature 20.0 10 > th dose independent rect. 2 18
895 559.51 radiation 1.0 270 < th dose dependent rect. 6 18
995 562.05 radiation 1.0 270 < th dose dependent rect. 5 20