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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0710100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0136) R2 : 0.0383
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.122 (0.0287) R2dN8 : 0.0494 R2N8 : 0.0383
σ : 0.256
deviance : 30.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.11 0.24 3.19 0.177 0.112 0.289 0.0974 1.11 -0.154 8.75 89.94 5852 -- --
27.67 0.245 3.19 0.107 0.142 0.363 0.151 -- -0.179 7.86 89 4774 -- --
26.14 0.238 3.19 0.176 0.111 0.286 -- 1.11 -0.153 8.75 89.22 5849 -- --
27.69 0.245 3.19 0.102 0.142 0.356 -- -- -0.184 7.89 89.14 4778 -- --
26.84 0.241 3.19 0.175 -- 0.289 -- 1.09 -0.153 -- 89 5838 -- --
29.23 0.253 3.17 0.0856 0.11 -- 0.0917 -- -0.113 8.61 -- -- -- --
29.26 0.253 3.17 0.0886 0.11 -- -- -- -0.113 8.62 -- -- -- --
28.41 0.248 3.19 0.106 -- 0.352 -- -- -0.186 -- 103.4 4346 -- --
27.96 0.246 3.19 -- 0.136 0.353 -- -- -0.19 7.76 88 4698 -- --
29.94 0.256 3.18 0.0889 -- -- -- -- -0.112 -- -- -- -- --
29.47 0.254 3.17 -- 0.11 -- -- -- -0.123 8.56 -- -- -- --
28.62 0.249 3.19 -- -- 0.347 -- -- -0.182 -- 88 4341 -- --
30.15 0.256 3.18 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.40 humidity 80 14400 < th dose dependent rect. 3 6
8 25.72 temperature 25 90 > th dose dependent rect. 2 2
12 25.82 humidity 80 14400 < th dose dependent rect. 21 13
13 25.83 humidity 80 14400 < th dose dependent rect. 23 11
17 25.89 humidity 70 14400 > th dose independent rect. 8 1
19 25.94 humidity 70 14400 > th dose independent rect. 5 5
26 25.95 humidity 70 14400 > th dose independent rect. 7 3
33 25.97 humidity 70 14400 < th dose independent rect. 7 3
49 26.02 atmosphere 1000 10 < th dose dependent rect. 2 2
50 26.03 atmosphere 1000 10 < th dose independent rect. 2 2
53 26.04 humidity 50 4320 > th dose dependent rect. 23 16
54 26.04 humidity 90 4320 < th dose dependent rect. 23 17
61 26.07 atmosphere 1000 90 < th dose independent rect. 2 1
64 26.07 atmosphere 1000 90 < th dose dependent rect. 2 1
112 26.11 wind 1 14400 < th dose dependent rect. 6 1
124 26.13 humidity 50 4320 > th dose dependent sin 5 NA
125 26.13 humidity 50 4320 > th dose dependent rect. 11 2
135 26.15 humidity 90 4320 < th dose dependent sin 6 NA
152 26.17 temperature 25 90 > th dose independent rect. 2 2
162 26.18 humidity 90 4320 < th dose dependent rect. 11 2
193 26.21 humidity 70 4320 > th dose dependent rect. 3 8
244 26.26 humidity 70 4320 > th dose independent sin 4 NA
245 26.26 humidity 70 4320 > th dose independent rect. 10 1
246 26.26 humidity 70 4320 > th dose independent rect. 8 7
247 26.26 humidity 70 4320 > th dose independent rect. 5 10
313 26.29 humidity 70 4320 > th dose independent rect. 8 5
314 26.29 humidity 70 4320 > th dose independent rect. 8 10
378 26.31 humidity 70 4320 < th dose independent rect. 8 7
398 26.31 humidity 80 4320 < th dose dependent rect. 14 1
414 26.32 humidity 70 4320 < th dose independent rect. 10 1
453 26.33 humidity 70 4320 < th dose independent sin 3 NA
807 26.41 humidity 70 4320 > th dose independent rect. 16 23
810 26.41 humidity 80 4320 > th dose dependent rect. 7 2
833 26.42 humidity 70 4320 > th dose independent rect. 14 22
880 26.44 humidity 70 4320 > th dose independent no NA NA
883 26.44 wind 1 14400 < th dose independent rect. 4 3
967 26.44 humidity 70 4320 > th dose independent rect. 10 23
972 26.44 humidity 90 4320 < th dose dependent no NA NA
985 26.44 humidity 90 4320 < th dose dependent rect. 3 23
989 26.45 wind 1 14400 > th dose independent rect. 4 3