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Os01g0709500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0245) R2 : 0.812
β1 : -1.22 (0.0895) R2dD : 0.0794 R2D : 0.0703
β2 : 2.63 (0.0637) R2dC : 0.709 R2C : 0.699
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.312 (0.0522) R2dN8 : 0.0198 R2N8 : 0.0298
σ : 0.459
deviance : 96.26
__
_____
C
peak time of C : 6.45
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.71 0.414 11 -1.43 2.42 -0.574 0.857 -2.91 0.281 6.74 25.43 84 -- --
80.18 0.417 11 -1.12 2.41 -0.809 1.05 -- 0.331 6.71 26.6 121 -- --
78.56 0.413 11 -1.51 2.36 -0.55 -- -3.73 0.254 6.69 25.36 178 -- --
82.45 0.423 11 -1.09 2.37 -0.951 -- -- 0.318 6.72 26.99 166 -- --
257.18 0.747 11 -0.657 -- -2.74 -- 0.587 0.599 -- 24.5 389 -- --
91.28 0.448 11 -1.24 2.63 -- 1.42 -- 0.316 6.42 -- -- -- --
96.26 0.459 11 -1.22 2.63 -- -- -- 0.312 6.45 -- -- -- --
257.21 0.747 11 -0.727 -- -2.63 -- -- 0.597 -- 24.6 387 -- --
111.84 0.493 10.9 -- 2.2 -1.16 -- -- 0.549 6.95 24.3 182 -- --
456.49 0.998 11 -1.15 -- -- -- -- 0.367 -- -- -- -- --
135.36 0.544 10.9 -- 2.62 -- -- -- 0.448 6.47 -- -- -- --
270.46 0.766 10.9 -- -- -2.72 -- -- 0.69 -- 24.5 387 -- --
491.43 1.03 11 -- -- -- -- -- 0.495 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.60 temperature 30 270 < th dose independent rect. 1 21
12 74.95 temperature 10 270 > th dose dependent rect. 6 11
13 74.99 atmosphere 995 30 > th dose dependent rect. 4 19
16 75.29 temperature 10 270 > th dose dependent rect. 9 16
18 75.42 humidity 70 270 > th dose independent rect. 15 6
19 75.43 temperature 30 270 < th dose independent rect. 15 6
25 75.54 humidity 70 90 > th dose independent rect. 15 8
30 75.64 temperature 25 270 > th dose dependent rect. 19 21
31 75.70 humidity 50 270 > th dose dependent rect. 15 6
33 75.73 humidity 70 90 > th dose independent rect. 17 6
34 75.81 atmosphere 1015 270 < th dose dependent rect. 9 8
37 75.88 humidity 50 90 > th dose dependent rect. 17 6
40 75.91 temperature 20 270 > th dose dependent rect. 8 8
43 75.96 temperature 25 270 > th dose dependent rect. 21 19
56 76.14 humidity 70 270 > th dose independent rect. 17 3
66 76.21 atmosphere 1000 10 > th dose independent rect. 10 13
71 76.27 humidity 50 270 > th dose dependent rect. 17 3
78 76.33 humidity 60 90 > th dose dependent rect. 3 20
95 76.45 temperature 25 270 > th dose dependent sin 2 NA
101 76.53 atmosphere 1000 30 > th dose independent rect. 4 19
115 76.70 radiation 20 270 < th dose dependent rect. 15 6
126 76.81 temperature 30 270 < th dose independent rect. 17 3
133 76.85 temperature 25 90 > th dose dependent sin 22 NA
140 76.91 temperature 30 270 < th dose independent rect. 1 12
143 76.93 temperature 25 90 > th dose dependent rect. 8 12
145 76.97 temperature 30 270 < th dose independent rect. 9 12
154 77.01 radiation 40 270 < th dose dependent rect. 1 22
158 77.03 radiation 1 270 < th dose dependent rect. 9 10
168 77.08 radiation 1 270 < th dose dependent rect. 13 6
173 77.08 temperature 25 30 > th dose dependent rect. 19 23
180 77.11 radiation 1 270 < th dose independent rect. 8 12
193 77.15 radiation 10 270 < th dose independent rect. 15 6
201 77.16 radiation 1 270 < th dose dependent sin 0 NA
207 77.18 radiation 1 270 < th dose independent rect. 13 7
221 77.20 temperature 25 90 > th dose dependent rect. 23 21
224 77.21 temperature 25 90 > th dose dependent rect. 8 20
282 77.42 temperature 30 270 < th dose independent rect. 13 22
285 77.43 radiation 1 270 < th dose independent sin 23 NA
301 77.48 radiation 40 270 < th dose independent rect. 10 12
302 77.48 radiation 40 270 < th dose independent rect. 24 23
323 77.53 humidity 70 10 > th dose dependent rect. 16 7
351 77.60 atmosphere 1005 270 > th dose independent rect. 2 19
365 77.63 atmosphere 1005 270 > th dose independent rect. 3 17
370 77.64 radiation 1 270 < th dose independent rect. 17 2
377 77.66 atmosphere 1000 10 > th dose dependent rect. 12 11
389 77.70 atmosphere 995 10 > th dose dependent rect. 10 13
398 77.71 humidity 60 270 > th dose dependent rect. 1 21
408 77.74 atmosphere 1010 10 < th dose dependent rect. 12 6
415 77.76 wind 1 90 > th dose independent rect. 23 18
418 77.76 atmosphere 995 90 > th dose dependent rect. 11 11
442 77.80 temperature 25 90 > th dose dependent rect. 11 9
453 77.82 temperature 30 270 > th dose independent rect. 9 7
465 77.84 temperature 30 270 > th dose independent sin 2 NA
466 77.84 temperature 30 720 < th dose independent rect. 10 2
473 77.85 temperature 25 90 > th dose dependent no NA NA
480 77.86 temperature 25 90 > th dose dependent rect. 3 23
497 77.89 temperature 30 270 > th dose independent rect. 18 22
506 77.90 radiation 40 270 < th dose dependent rect. 10 11
512 77.91 temperature 30 270 < th dose independent sin 2 NA
518 77.91 temperature 25 90 > th dose dependent rect. 11 23
532 77.95 temperature 15 1440 > th dose independent rect. 20 4
542 77.97 humidity 70 90 > th dose independent rect. 3 20
549 77.98 atmosphere 995 90 > th dose dependent rect. 9 13
554 77.99 temperature 15 90 > th dose dependent rect. 11 16
575 78.01 humidity 70 270 > th dose independent rect. 1 21
576 78.01 atmosphere 1010 270 < th dose dependent rect. 13 1
593 78.03 temperature 25 90 > th dose dependent rect. 11 17
726 78.20 temperature 25 30 > th dose dependent rect. 13 23
752 78.24 radiation 1 90 < th dose dependent rect. 4 19
756 78.24 temperature 25 30 > th dose dependent rect. 15 23
760 78.25 radiation 1 270 < th dose independent rect. 3 18
799 78.28 humidity 70 10 > th dose independent rect. 18 5
800 78.28 atmosphere 1005 270 > th dose independent rect. 15 6
853 78.32 temperature 30 90 < th dose dependent rect. 15 8
872 78.33 humidity 60 90 > th dose dependent rect. 3 22
914 78.38 temperature 10 270 > th dose dependent rect. 20 21
941 78.40 temperature 10 30 > th dose dependent rect. 23 19
947 78.41 temperature 30 270 < th dose dependent rect. 13 8
992 78.46 humidity 60 10 > th dose dependent rect. 14 9