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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0709100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0266) R2 : 0.0083
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.11 (0.056) R2dN8 : 0.0107 R2N8 : 0.0083
σ : 0.501
deviance : 115.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.1 0.488 3.03 -0.665 0.132 0.375 0.213 3.01 -0.235 10.7 0.1158 7453 -- --
112.62 0.494 2.95 -0.239 0.111 0.165 -0.0955 -- -0.127 10.2 10.31 7380 -- --
108.22 0.485 3.03 -0.66 0.128 0.385 -- 3 -0.238 10.6 0.05996 7406 -- --
112.21 0.493 2.94 -0.243 0.106 0.246 -- -- -0.0455 10.1 14.92 8721 -- --
109.17 0.487 3.03 -0.663 -- 0.385 -- 2.96 -0.238 -- 0.06 7364 -- --
113.74 0.5 2.95 -0.193 0.103 -- -0.0224 -- -0.131 9.5 -- -- -- --
113.74 0.499 2.95 -0.194 0.104 -- -- -- -0.131 9.36 -- -- -- --
112.62 0.494 2.94 -0.228 -- 0.279 -- -- -0.0459 -- 16.06 9505 -- --
113.24 0.496 2.94 -- 0.107 0.201 -- -- -0.0474 9.97 14.44 13093 -- --
114.37 0.5 2.96 -0.194 -- -- -- -- -0.131 -- -- -- -- --
114.73 0.501 2.95 -- 0.104 -- -- -- -0.11 9.5 -- -- -- --
113.63 0.496 2.93 -- -- 0.217 -- -- -0.0304 -- 14.28 19754 -- --
115.37 0.501 2.95 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.82 radiation 1.0 4320 < th dose independent rect. 18 11
2 104.06 radiation 1.0 4320 < th dose independent rect. 18 7
6 104.15 radiation 1.0 4320 < th dose independent rect. 18 2
8 104.17 radiation 1.0 4320 < th dose independent rect. 18 5
12 104.83 wind 9.0 90 > th dose independent rect. 19 15
13 104.85 wind 1.0 43200 < th dose dependent rect. 16 1
14 105.03 wind 9.0 90 > th dose independent rect. 21 13
16 105.05 wind 1.0 43200 < th dose independent rect. 16 1
18 105.23 wind 9.0 90 > th dose independent rect. 1 9
21 105.29 radiation 10.0 90 < th dose independent rect. 10 1
22 105.38 wind 1.0 14400 < th dose independent rect. 19 1
23 105.44 temperature 20.0 14400 < th dose independent rect. 10 9
24 105.46 temperature 20.0 14400 > th dose independent rect. 9 10
26 105.50 temperature 20.0 14400 > th dose independent rect. 17 1
29 105.53 temperature 20.0 14400 > th dose independent rect. 11 7
35 105.58 temperature 20.0 14400 < th dose dependent rect. 8 2
43 105.62 temperature 20.0 14400 < th dose independent rect. 12 1
51 105.65 precipitation 0.1 14400 < th dose independent rect. 9 2
52 105.65 precipitation 0.1 14400 < th dose dependent rect. 9 2
58 105.68 wind 1.0 43200 > th dose independent rect. 16 1
63 105.74 temperature 20.0 14400 > th dose independent rect. 12 1
66 105.75 temperature 20.0 14400 < th dose independent rect. 16 2
80 105.82 precipitation 0.1 14400 > th dose independent rect. 9 2
83 105.82 precipitation 0.1 14400 > th dose dependent rect. 9 2
96 105.86 humidity 90.0 14400 < th dose independent rect. 12 1
123 105.94 temperature 20.0 14400 < th dose dependent rect. 8 13
131 105.97 wind 1.0 14400 > th dose independent rect. 19 1
138 105.98 precipitation 0.1 14400 < th dose independent rect. 7 5
140 105.98 precipitation 0.1 14400 < th dose dependent rect. 7 5
141 105.99 temperature 20.0 14400 > th dose independent rect. 9 1
143 105.99 temperature 20.0 14400 > th dose independent rect. 8 3
153 106.01 wind 9.0 30 > th dose independent rect. 19 7
164 106.02 temperature 20.0 14400 < th dose independent rect. 8 2
175 106.04 precipitation 0.1 14400 > th dose independent rect. 6 7
178 106.04 precipitation 0.1 14400 > th dose dependent rect. 6 7
190 106.06 wind 1.0 14400 < th dose dependent rect. 19 1
201 106.09 precipitation 0.1 14400 < th dose independent rect. 14 1
204 106.09 precipitation 0.1 14400 < th dose dependent rect. 14 1
235 106.16 humidity 90.0 14400 > th dose independent rect. 12 1
248 106.19 precipitation 0.1 14400 > th dose independent rect. 14 1
261 106.19 precipitation 0.1 14400 > th dose dependent rect. 14 1
268 106.21 wind 9.0 30 > th dose dependent rect. 19 7
304 106.27 temperature 20.0 14400 < th dose dependent rect. 17 3
309 106.28 temperature 20.0 14400 < th dose dependent rect. 16 5
311 106.29 radiation 10.0 90 < th dose dependent rect. 10 1
357 106.35 wind 9.0 30 > th dose independent rect. 21 5
378 106.35 wind 9.0 30 > th dose dependent rect. 21 5
400 106.36 temperature 20.0 14400 < th dose dependent sin 21 NA
427 106.38 precipitation 0.1 14400 > th dose independent rect. 16 1
438 106.39 precipitation 0.1 14400 > th dose dependent rect. 21 1
449 106.40 wind 9.0 270 > th dose independent rect. 19 3
453 106.40 precipitation 0.1 14400 > th dose dependent rect. 16 1
454 106.40 radiation 1.0 4320 < th dose dependent rect. 18 11
460 106.42 wind 3.0 10 > th dose dependent rect. 2 1
464 106.43 precipitation 0.1 14400 < th dose independent rect. 16 1
465 106.43 precipitation 0.1 14400 < th dose dependent rect. 16 1
476 106.46 temperature 15.0 14400 > th dose independent rect. 5 1
477 106.46 wind 9.0 270 > th dose dependent rect. 19 3
479 106.47 wind 9.0 270 > th dose independent rect. 21 1
482 106.47 wind 9.0 270 > th dose dependent rect. 21 1
510 106.51 wind 5.0 90 > th dose independent rect. 1 1
526 106.51 wind 9.0 30 > th dose dependent rect. 1 10
532 106.52 precipitation 0.1 14400 > th dose independent rect. 21 1
557 106.53 precipitation 0.1 14400 < th dose independent rect. 21 1
558 106.53 wind 5.0 10 > th dose independent rect. 24 2
568 106.53 precipitation 0.1 14400 < th dose dependent rect. 21 1
569 106.53 wind 5.0 10 > th dose dependent rect. 24 2
577 106.54 temperature 20.0 14400 < th dose independent sin 23 NA
586 106.58 precipitation 0.1 270 > th dose independent rect. 8 1
587 106.58 precipitation 0.1 14400 > th dose independent rect. 18 1
589 106.58 precipitation 0.1 270 > th dose dependent rect. 8 1
609 106.61 radiation 1.0 4320 < th dose dependent rect. 18 7
610 106.61 precipitation 0.1 14400 > th dose dependent rect. 10 7
615 106.62 precipitation 0.1 14400 > th dose independent rect. 10 9
624 106.64 temperature 15.0 14400 < th dose independent rect. 4 1
626 106.64 radiation 1.0 4320 < th dose dependent rect. 18 1
631 106.65 wind 1.0 90 < th dose independent rect. 10 1
632 106.65 precipitation 0.1 14400 < th dose independent rect. 18 1
633 106.65 precipitation 0.1 14400 < th dose independent rect. 10 9
635 106.65 precipitation 0.1 14400 < th dose dependent rect. 18 1
636 106.65 precipitation 0.1 14400 < th dose dependent rect. 10 9
637 106.66 temperature 15.0 14400 > th dose independent rect. 4 6
654 106.68 precipitation 0.1 14400 > th dose dependent rect. 18 1
659 106.69 temperature 20.0 14400 > th dose independent sin 23 NA
668 106.69 radiation 1.0 720 < th dose dependent rect. 21 9
722 106.79 temperature 20.0 720 < th dose independent rect. 9 1
730 106.80 precipitation 0.1 14400 > th dose independent rect. 10 20
738 106.81 precipitation 0.1 14400 < th dose independent rect. 10 20
743 106.81 precipitation 0.1 14400 < th dose dependent rect. 10 20
751 106.82 precipitation 0.1 14400 < th dose independent rect. 21 22
755 106.82 radiation 1.0 720 < th dose dependent rect. 3 5
762 106.82 precipitation 0.1 14400 > th dose dependent rect. 21 20
763 106.82 precipitation 0.1 14400 < th dose dependent rect. 21 22
767 106.83 precipitation 0.1 14400 < th dose independent rect. 14 3
771 106.83 precipitation 0.1 14400 > th dose independent rect. 4 19
772 106.83 precipitation 0.1 14400 < th dose independent rect. 4 21
773 106.83 precipitation 0.1 14400 > th dose independent rect. 21 22
774 106.83 humidity 90.0 14400 > th dose dependent rect. 11 2
776 106.83 precipitation 0.1 14400 < th dose dependent rect. 14 3
779 106.83 precipitation 0.1 14400 < th dose dependent rect. 4 21
783 106.84 precipitation 0.1 14400 > th dose independent rect. 14 5
784 106.84 precipitation 0.1 14400 < th dose independent rect. 4 19
788 106.84 precipitation 0.1 14400 < th dose dependent rect. 4 19
793 106.85 precipitation 0.1 14400 < th dose independent rect. 14 5
798 106.85 precipitation 0.1 14400 > th dose independent rect. 4 21
802 106.85 precipitation 0.1 14400 < th dose dependent rect. 14 5
812 106.86 precipitation 0.1 14400 > th dose independent rect. 10 13
835 106.88 precipitation 0.1 14400 < th dose independent rect. 10 13
839 106.88 precipitation 0.1 14400 < th dose dependent rect. 10 13
861 106.90 radiation 1.0 1440 < th dose dependent rect. 22 7
875 106.91 radiation 10.0 14400 < th dose dependent rect. 11 1
897 106.93 radiation 20.0 43200 > th dose independent rect. 17 1
918 106.93 precipitation 0.1 14400 < th dose independent rect. 8 17
921 106.93 precipitation 0.1 14400 < th dose independent rect. 21 20
923 106.93 radiation 20.0 43200 > th dose dependent rect. 17 1
941 106.93 precipitation 0.1 14400 < th dose dependent rect. 8 17
945 106.93 precipitation 0.1 14400 < th dose dependent rect. 21 20