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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0709000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor MYB1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0256) R2 : 0.236
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.31 (0.364) R2dE : 0.236 R2E : 0.234
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0469 (0.0539) R2dN8 : 0.00208 R2N8 : -3.93e-05
σ : 0.472
deviance : 102.03
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.6
memory length : 12
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6
open length of G : 7.86

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
105.61 0.483 2.89 0.052 0.179 1.43 0.432 -7.7 0.0645 10.3 0.957 10 5.98 6.37
99.24 0.468 2.91 0.0716 0.182 4.33 0.394 -- 0.0559 10.4 0.6599 10 6 6.64
100.11 0.47 2.91 0.0976 0.182 4.83 -- 1.42 0.0595 11.4 0.7785 12 6 6.58
99.77 0.468 2.91 0.0879 0.182 4.3 -- -- 0.0578 11.3 0.6601 12 6 6.38
101.74 0.472 2.92 0.1 -- 5.84 -- 3.8 0.0563 -- 0.6369 12 5.99 6
135.79 0.546 2.92 -0.0559 0.223 -- 0.168 -- 0.0174 10.7 -- -- -- --
135.9 0.546 2.92 -0.049 0.222 -- -- -- 0.018 10.7 -- -- -- --
101.85 0.472 2.91 0.0848 -- 4.35 -- -- 0.0565 -- 0.5991 12 6 6
99.97 0.468 2.91 -- 0.182 4.26 -- -- 0.0478 11.3 0.5999 12 5.98 7.87
138.93 0.551 2.92 -0.0533 -- -- -- -- 0.0168 -- -- -- -- --
135.97 0.545 2.91 -- 0.222 -- -- -- 0.0235 10.7 -- -- -- --
102.03 0.472 2.91 -- -- 4.31 -- -- 0.0469 -- 0.6 12 6 7.86
139.01 0.55 2.92 -- -- -- -- -- 0.0227 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.65 radiation 1 10 < th dose dependent rect. 6 6
3 111.93 radiation 1 10 < th dose independent rect. 6 6
9 115.76 radiation 1 90 < th dose independent rect. 10 1
11 115.76 radiation 1 90 < th dose dependent rect. 10 1
13 117.92 radiation 10 10 < th dose dependent rect. 11 1
15 118.31 radiation 1 10 < th dose independent rect. 11 1
53 119.43 radiation 1 10 < th dose dependent rect. 5 9
106 125.67 radiation 1 1440 < th dose independent rect. 11 1
107 125.67 radiation 1 1440 < th dose dependent rect. 11 1
108 126.14 radiation 1 10 < th dose dependent rect. 5 2
123 126.82 temperature 20 10 < th dose dependent rect. 6 1
127 126.93 temperature 20 10 < th dose dependent rect. 4 3
154 127.68 wind 1 720 < th dose dependent rect. 4 1
156 127.71 radiation 1 10 < th dose dependent rect. 19 19
174 128.06 wind 1 270 > th dose independent rect. 1 12
190 128.34 temperature 20 270 < th dose dependent rect. 2 1
191 128.35 radiation 1 10 < th dose independent rect. 19 19
195 128.40 radiation 20 10 < th dose independent rect. 12 1
208 128.63 radiation 1 10 < th dose dependent rect. 19 17
210 128.68 temperature 20 10 < th dose independent rect. 4 2
218 128.84 radiation 1 10 < th dose independent rect. 6 1
229 128.87 atmosphere 1005 10 < th dose independent rect. 5 1
237 128.90 radiation 1 10 > th dose independent rect. 13 23
258 129.23 radiation 1 10 < th dose independent rect. 19 17
263 129.29 wind 1 270 < th dose dependent rect. 4 3
264 129.31 radiation 1 1440 < th dose independent rect. 22 7
283 129.43 radiation 1 1440 < th dose independent rect. 19 10
296 129.58 radiation 1 10 < th dose dependent rect. 16 22
298 129.60 wind 1 270 < th dose independent rect. 6 1
300 129.61 radiation 1 1440 < th dose independent rect. 2 3
318 129.77 humidity 90 10 > th dose dependent rect. 6 1
323 129.84 radiation 1 10 > th dose independent sin 4 NA
328 129.85 radiation 10 1440 < th dose dependent rect. 22 7
332 129.91 radiation 1 10 < th dose dependent rect. 3 23
336 129.98 wind 1 270 < th dose dependent rect. 6 1
339 130.00 temperature 20 270 < th dose independent rect. 2 4
344 130.02 humidity 50 14400 < th dose dependent rect. 14 21
346 130.03 radiation 10 1440 < th dose dependent rect. 2 3
350 130.06 radiation 10 1440 < th dose dependent rect. 19 10
355 130.09 wind 1 90 < th dose dependent rect. 4 7
369 130.17 radiation 1 90 < th dose dependent rect. 17 21
371 130.18 wind 1 90 < th dose dependent rect. 4 9
373 130.20 humidity 50 14400 > th dose independent rect. 14 2
374 130.20 radiation 1 10 < th dose independent rect. 16 22
377 130.21 humidity 50 14400 < th dose dependent sin 11 NA
381 130.23 humidity 50 14400 < th dose dependent rect. 14 4
399 130.25 radiation 1 10 < th dose dependent no NA NA
401 130.25 radiation 1 10 < th dose dependent rect. 11 21
407 130.25 radiation 1 10 < th dose dependent rect. 13 23
409 130.26 humidity 50 14400 < th dose independent rect. 15 1
424 130.31 wind 1 270 < th dose independent rect. 4 1
440 130.35 humidity 50 14400 > th dose independent rect. 13 22
449 130.38 humidity 50 14400 < th dose independent rect. 13 22
456 130.41 humidity 50 14400 < th dose dependent rect. 15 1
468 130.46 humidity 50 14400 > th dose independent rect. 13 4
481 130.49 wind 1 270 < th dose independent rect. 4 3
486 130.50 humidity 50 14400 > th dose independent rect. 13 8
487 130.50 humidity 50 14400 > th dose independent rect. 13 16
502 130.51 radiation 1 10 < th dose dependent sin 2 NA
508 130.52 humidity 50 14400 > th dose independent rect. 9 9
516 130.54 humidity 50 14400 > th dose independent sin 18 NA
524 130.54 humidity 50 14400 > th dose independent rect. 4 14
529 130.54 humidity 50 14400 > th dose independent rect. 9 19
577 130.56 humidity 50 14400 > th dose independent rect. 2 22
589 130.57 humidity 50 14400 > th dose independent no NA NA
652 130.57 radiation 1 10 < th dose independent rect. 3 23
655 130.58 temperature 20 270 < th dose independent rect. 2 1
656 130.58 humidity 50 14400 < th dose independent rect. 13 5
732 130.62 temperature 30 1440 < th dose independent rect. 13 3
783 130.68 radiation 1 1440 > th dose independent rect. 9 1
797 130.70 radiation 1 14400 < th dose dependent rect. 9 1
801 130.71 humidity 50 14400 < th dose independent sin 18 NA
802 130.71 radiation 1 720 > th dose independent rect. 4 1
813 130.71 radiation 1 720 > th dose dependent rect. 4 1
828 130.71 wind 1 90 < th dose dependent rect. 4 12
835 130.72 wind 1 90 < th dose independent rect. 4 7
839 130.72 humidity 60 43200 < th dose dependent rect. 12 2
851 130.73 humidity 50 14400 < th dose independent rect. 9 9
868 130.73 wind 1 90 < th dose dependent sin 2 NA
882 130.74 humidity 50 14400 < th dose independent no NA NA