Os01g0706600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0706600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.12 | 0.415 | 7.48 | -2.29 | 0.528 | 2.1 | -1.97 | 6.06 | -0.437 | 13.5 | 0.83 | 4285 | -- | -- |
| 95.05 | 0.454 | 7.31 | -1.39 | 0.52 | 1.41 | -1.82 | -- | -0.0997 | 12.9 | 4.432 | 8561 | -- | -- |
| 80.75 | 0.419 | 7.46 | -2.21 | 1.27 | 2.34 | -- | 6.54 | -0.411 | 13.6 | 0.8753 | 4555 | -- | -- |
| 103.88 | 0.475 | 7.31 | -1.46 | 0.549 | 1.38 | -- | -- | -0.0962 | 13.9 | 4.498 | 8520 | -- | -- |
| 112.09 | 0.493 | 7.49 | -2.02 | -- | 2.63 | -- | 6.13 | -0.369 | -- | 0.54 | 12826 | -- | -- |
| 124.7 | 0.524 | 7.39 | -1.54 | 0.681 | -- | -1.52 | -- | -0.468 | 13.4 | -- | -- | -- | -- |
| 134.05 | 0.542 | 7.39 | -1.6 | 0.681 | -- | -- | -- | -0.476 | 13.3 | -- | -- | -- | -- |
| 120.62 | 0.512 | 7.31 | -1.45 | -- | 1.54 | -- | -- | -0.0855 | -- | 4.45 | 8447 | -- | -- |
| 91.53 | 0.446 | 7.29 | -- | 0.723 | 1.65 | -- | -- | 0.081 | 14.1 | 0.0539 | 45420 | -- | -- |
| 162.65 | 0.596 | 7.4 | -1.62 | -- | -- | -- | -- | -0.49 | -- | -- | -- | -- | -- |
| 201.11 | 0.663 | 7.35 | -- | 0.709 | -- | -- | -- | -0.299 | 13.4 | -- | -- | -- | -- |
| 116.44 | 0.503 | 7.25 | -- | -- | 1.68 | -- | -- | 0.175 | -- | 0.2396 | 47520 | -- | -- |
| 232.02 | 0.711 | 7.36 | -- | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.65 | temperature | 25 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 18 | 67.04 | temperature | 25 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 20 | 67.05 | temperature | 25 | 14400 | > th | dose independent | sin | 4 | NA |
| 46 | 67.26 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 55 | 67.31 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 62 | 67.36 | temperature | 25 | 14400 | < th | dose independent | sin | 3 | NA |
| 105 | 67.55 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 106 | 67.55 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 116 | 67.59 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 124 | 67.64 | temperature | 20 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 207 | 68.03 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 22 |
| 212 | 68.04 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 4 |
| 230 | 68.08 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 231 | 68.09 | temperature | 25 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 268 | 68.16 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 284 | 68.19 | temperature | 25 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 288 | 68.20 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 292 | 68.20 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 293 | 68.20 | temperature | 20 | 14400 | > th | dose dependent | sin | 2 | NA |
| 315 | 68.23 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 353 | 68.29 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 370 | 68.31 | temperature | 20 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 475 | 68.45 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 479 | 68.45 | temperature | 20 | 14400 | > th | dose dependent | rect. | 6 | 18 |
| 609 | 68.59 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 618 | 68.60 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 622 | 68.60 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 660 | 68.63 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 668 | 68.64 | temperature | 20 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 672 | 68.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 673 | 68.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 698 | 68.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 699 | 68.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 23 |