Os01g0705300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0705300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.91 | 0.339 | 12.8 | 0.139 | 1.25 | -0.536 | -0.269 | 0.153 | -0.516 | 19.4 | 20.4 | 106 | -- | -- |
| 52.03 | 0.336 | 12.8 | 0.113 | 1.25 | -0.545 | -0.265 | -- | -0.521 | 19.4 | 20.45 | 106 | -- | -- |
| 52.11 | 0.336 | 12.8 | 0.145 | 1.25 | -0.538 | -- | 0.149 | -0.516 | 19.4 | 20.41 | 105 | -- | -- |
| 52.22 | 0.337 | 12.8 | 0.12 | 1.25 | -0.549 | -- | -- | -0.522 | 19.4 | 20.4 | 106 | -- | -- |
| 134.52 | 0.543 | 12.8 | 0.133 | -- | -0.552 | -- | 0.191 | -0.531 | -- | 20.4 | 81 | -- | -- |
| 63.75 | 0.374 | 12.8 | -0.0411 | 1.25 | -- | -0.353 | -- | -0.626 | 19.8 | -- | -- | -- | -- |
| 64.11 | 0.375 | 12.8 | -0.0316 | 1.25 | -- | -- | -- | -0.627 | 19.8 | -- | -- | -- | -- |
| 133.92 | 0.541 | 12.8 | 0.0925 | -- | -0.572 | -- | -- | -0.536 | -- | 20.6 | 47 | -- | -- |
| 52.58 | 0.338 | 12.8 | -- | 1.25 | -0.528 | -- | -- | -0.538 | 19.4 | 20.5 | 106 | -- | -- |
| 149.28 | 0.571 | 12.8 | -0.0464 | -- | -- | -- | -- | -0.644 | -- | -- | -- | -- | -- |
| 64.13 | 0.375 | 12.8 | -- | 1.25 | -- | -- | -- | -0.623 | 19.8 | -- | -- | -- | -- |
| 134.14 | 0.541 | 12.8 | -- | -- | -0.559 | -- | -- | -0.548 | -- | 20.6 | 47 | -- | -- |
| 149.34 | 0.57 | 12.8 | -- | -- | -- | -- | -- | -0.639 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.75 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 14 |
| 8 | 49.43 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 14 |
| 19 | 50.30 | temperature | 20 | 90 | > th | dose independent | sin | 8 | NA |
| 33 | 50.75 | temperature | 20 | 90 | < th | dose independent | sin | 8 | NA |
| 47 | 51.22 | temperature | 20 | 10 | < th | dose independent | sin | 8 | NA |
| 50 | 51.34 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 12 |
| 51 | 51.34 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 64 | 51.64 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 10 |
| 68 | 51.72 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 14 |
| 83 | 51.88 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 16 |
| 84 | 51.88 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 22 |
| 87 | 51.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 94 | 51.96 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 22 |
| 143 | 52.37 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 159 | 52.46 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 16 |
| 189 | 52.59 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 204 | 52.64 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 22 |
| 206 | 52.65 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 12 |
| 242 | 52.76 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 259 | 52.80 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 283 | 52.84 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 20 |
| 325 | 52.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 14 |
| 345 | 52.97 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 23 |
| 347 | 52.98 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 364 | 53.01 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 7 |
| 395 | 53.06 | temperature | 20 | 90 | > th | dose independent | rect. | 14 | 23 |
| 428 | 53.15 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 23 |
| 493 | 53.30 | temperature | 25 | 10 | < th | dose dependent | sin | 8 | NA |
| 503 | 53.32 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 23 |
| 518 | 53.36 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 523 | 53.37 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 21 |
| 557 | 53.44 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 623 | 53.55 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 629 | 53.56 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 23 |
| 630 | 53.56 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 631 | 53.56 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 632 | 53.57 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 665 | 53.62 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 684 | 53.67 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 688 | 53.68 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 3 |
| 692 | 53.68 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 698 | 53.69 | temperature | 20 | 90 | < th | dose independent | rect. | 5 | 23 |
| 712 | 53.73 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 726 | 53.76 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 747 | 53.80 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 21 |
| 846 | 53.98 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 23 |
| 865 | 54.03 | temperature | 15 | 10 | > th | dose dependent | sin | 10 | NA |
| 902 | 54.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 926 | 54.21 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 5 |
| 939 | 54.24 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 1 |
| 981 | 54.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 7 |