Os01g0704200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0704200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.78 | 0.214 | 9.63 | 0.348 | 0.648 | -0.967 | -0.339 | 1.77 | -0.102 | 13.9 | 17.3 | 1978 | -- | -- |
| 23.81 | 0.227 | 9.66 | 0.0809 | 0.646 | -1.02 | -0.39 | -- | -0.131 | 13.4 | 14.07 | 7758 | -- | -- |
| 21.21 | 0.215 | 9.62 | 0.354 | 0.638 | -0.959 | -- | 1.81 | -0.0998 | 13.9 | 17.36 | 2026 | -- | -- |
| 24.36 | 0.23 | 9.66 | 0.0702 | 0.641 | -1.04 | -- | -- | -0.145 | 13.4 | 10.6 | 7805 | -- | -- |
| 37.06 | 0.284 | 9.63 | 0.424 | -- | -1.29 | -- | 2.19 | -0.0546 | -- | 16.9 | 1056 | -- | -- |
| 41.94 | 0.304 | 9.73 | -0.441 | 0.675 | -- | -0.351 | -- | -0.42 | 13.3 | -- | -- | -- | -- |
| 42.45 | 0.305 | 9.73 | -0.453 | 0.675 | -- | -- | -- | -0.422 | 13.3 | -- | -- | -- | -- |
| 39.95 | 0.294 | 9.68 | -0.0833 | -- | -1.36 | -- | -- | -0.205 | -- | 13.03 | 1048 | -- | -- |
| 24.47 | 0.23 | 9.67 | -- | 0.644 | -1.01 | -- | -- | -0.151 | 13.4 | 10.28 | 7776 | -- | -- |
| 70.58 | 0.393 | 9.74 | -0.48 | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
| 47.86 | 0.324 | 9.72 | -- | 0.683 | -- | -- | -- | -0.372 | 13.3 | -- | -- | -- | -- |
| 40.11 | 0.295 | 9.68 | -- | -- | -1.39 | -- | -- | -0.191 | -- | 13.19 | 1050 | -- | -- |
| 76.65 | 0.409 | 9.72 | -- | -- | -- | -- | -- | -0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.08 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 20.15 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 20.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 13 | 20.55 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 14 | 20.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 16 | 20.57 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 29 | 20.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 47 | 20.67 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 51 | 20.67 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 61 | 20.69 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 64 | 20.69 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 82 | 20.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 91 | 20.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 99 | 20.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 140 | 20.83 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 175 | 20.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 6 |
| 289 | 21.07 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 318 | 21.11 | temperature | 20 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 326 | 21.12 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 341 | 21.14 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 351 | 21.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 370 | 21.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 393 | 21.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 397 | 21.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 13 |
| 429 | 21.22 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 457 | 21.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 460 | 21.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 471 | 21.26 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 485 | 21.27 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 500 | 21.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 501 | 21.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 514 | 21.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 517 | 21.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 521 | 21.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 534 | 21.30 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 558 | 21.31 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 605 | 21.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 608 | 21.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 617 | 21.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 627 | 21.35 | radiation | 1 | 14400 | < th | dose dependent | sin | 8 | NA |
| 640 | 21.36 | temperature | 20 | 43200 | < th | dose dependent | sin | 8 | NA |
| 658 | 21.36 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 16 |
| 672 | 21.37 | humidity | 90 | 43200 | > th | dose dependent | sin | 0 | NA |
| 709 | 21.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 805 | 21.41 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 826 | 21.41 | temperature | 20 | 43200 | < th | dose dependent | rect. | 13 | 17 |
| 838 | 21.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 869 | 21.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 874 | 21.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 960 | 21.45 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |