Os01g0703300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os01g0703300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.43 | 0.716 | 4.3 | -0.233 | 0.904 | -1.86 | 0.893 | 0.0115 | -0.42 | 8.06 | 20.9 | 2567 | -- | -- |
| 231.65 | 0.709 | 4.3 | -0.256 | 0.894 | -1.83 | 0.952 | -- | -0.42 | 7.97 | 21.1 | 2557 | -- | -- |
| 233.24 | 0.711 | 4.3 | -0.268 | 0.904 | -1.84 | -- | -0.0882 | -0.408 | 8.15 | 21.24 | 2581 | -- | -- |
| 233.25 | 0.711 | 4.3 | -0.247 | 0.902 | -1.83 | -- | -- | -0.406 | 8.14 | 21.24 | 2581 | -- | -- |
| 272.75 | 0.769 | 4.33 | -0.308 | -- | -1.89 | -- | -0.118 | -0.396 | -- | 21.4 | 2219 | -- | -- |
| 317.4 | 0.835 | 4.42 | -1.21 | 0.949 | -- | 0.856 | -- | -0.951 | 8.53 | -- | -- | -- | -- |
| 319.7 | 0.837 | 4.42 | -1.18 | 0.944 | -- | -- | -- | -0.951 | 8.67 | -- | -- | -- | -- |
| 272.83 | 0.769 | 4.32 | -0.289 | -- | -1.88 | -- | -- | -0.391 | -- | 21.36 | 2210 | -- | -- |
| 234.54 | 0.713 | 4.29 | -- | 0.898 | -1.93 | -- | -- | -0.348 | 8.11 | 21.3 | 2582 | -- | -- |
| 370.01 | 0.899 | 4.45 | -1.18 | -- | -- | -- | -- | -0.943 | -- | -- | -- | -- | -- |
| 356.71 | 0.883 | 4.39 | -- | 0.941 | -- | -- | -- | -0.819 | 8.77 | -- | -- | -- | -- |
| 274.4 | 0.772 | 4.3 | -- | -- | -2 | -- | -- | -0.336 | -- | 21.2 | 2230 | -- | -- |
| 406.91 | 0.942 | 4.42 | -- | -- | -- | -- | -- | -0.811 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 233.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 4 | 233.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 44 | 237.32 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 60 | 238.37 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 131 | 241.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 138 | 241.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 7 |
| 144 | 241.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 149 | 242.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 153 | 242.02 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 157 | 242.08 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 8 |
| 167 | 242.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 4 |
| 174 | 242.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 176 | 242.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 202 | 242.61 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 13 |
| 208 | 242.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 213 | 242.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 218 | 242.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 264 | 243.07 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 313 | 243.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 337 | 243.67 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 388 | 244.02 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 408 | 244.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 419 | 244.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 438 | 244.37 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 448 | 244.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 458 | 244.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 495 | 244.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 20 |
| 496 | 244.67 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 511 | 244.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 513 | 244.75 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 551 | 244.95 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 645 | 245.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 705 | 245.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 21 |
| 708 | 245.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 20 |
| 822 | 246.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 939 | 246.66 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 961 | 246.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 21 |