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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0703000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Poly(A) polymerase gamma (EC 2.7.7.19) (PAP gamma) (Polynucleotide adenylyltransferase gamma) (SRP RNA 3' adenylating enzyme).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.54 (0.0339) R2 : 0.764
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.93 (0.0808) R2dC : 0.671 R2C : 0.696
β3 : -1.66 (0.143) R2dE : 0.08 R2E : 0.0874
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.345 (0.0756) R2dN8 : 0.013 R2N8 : -0.019
σ : 0.623
deviance : 178.98
__
_____
C
peak time of C : 22.1
E
wheather : radiation
threshold : 1.631
memory length : 5812
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.91 0.618 4.53 0.656 2.92 -1.63 -0.0477 1.03 0.39 22.1 1.521 5794 -- --
174.21 0.615 4.53 0.495 2.91 -1.79 -0.186 -- 0.387 22.1 1.392 5812 -- --
172.84 0.612 4.53 0.649 2.92 -1.64 -- 1 0.391 22.1 1.53 5804 -- --
174.13 0.615 4.54 0.505 2.91 -1.79 -- -- 0.383 22.1 1.39 5804 -- --
325.4 0.845 4.53 0.12 -- -1.96 -- 0.314 0.0509 -- 1.74 6000 -- --
227.37 0.707 4.63 0.0746 2.96 -- -0.189 -- -0.0303 22.1 -- -- -- --
227.52 0.706 4.63 0.082 2.96 -- -- -- -0.0298 22.1 -- -- -- --
326.05 0.845 4.53 0.12 -- -1.96 -- -- 0.0497 -- 1.74 6000 -- --
178.98 0.623 4.54 -- 2.93 -1.66 -- -- 0.345 22.1 1.631 5812 -- --
757.78 1.29 4.55 0.122 -- -- -- -- -0.0254 -- -- -- -- --
227.69 0.706 4.63 -- 2.96 -- -- -- -0.039 22.1 -- -- -- --
326.43 0.844 4.54 -- -- -1.96 -- -- 0.0364 -- 1.74 6000 -- --
758.18 1.29 4.55 -- -- -- -- -- -0.0389 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.78 temperature 10 720 > th dose dependent rect. 10 13
7 162.51 temperature 15 720 > th dose dependent rect. 5 18
8 162.53 temperature 10 720 > th dose dependent rect. 11 11
10 162.62 temperature 15 720 > th dose dependent rect. 10 6
14 162.89 temperature 30 720 < th dose dependent rect. 7 15
21 163.13 temperature 30 720 < th dose dependent sin 21 NA
23 163.31 temperature 15 720 > th dose dependent sin 21 NA
62 164.98 temperature 30 720 < th dose dependent rect. 9 11
74 165.48 temperature 30 720 < th dose dependent rect. 10 9
121 167.43 humidity 80 43200 < th dose independent rect. 22 1
129 167.60 radiation 30 4320 < th dose independent rect. 16 16
147 168.00 humidity 80 43200 < th dose independent rect. 4 3
169 168.56 humidity 80 43200 > th dose independent rect. 22 1
175 168.70 radiation 30 4320 < th dose independent rect. 24 8
183 168.79 radiation 30 4320 < th dose independent rect. 2 6
204 169.32 radiation 30 4320 < th dose independent rect. 18 14
212 169.37 humidity 80 43200 < th dose independent rect. 22 9
235 169.57 temperature 10 720 > th dose dependent rect. 9 22
259 169.89 radiation 30 14400 < th dose independent rect. 6 2
268 169.98 humidity 80 43200 < th dose dependent rect. 22 10
278 170.15 wind 3 43200 > th dose dependent rect. 19 6
280 170.16 humidity 80 43200 < th dose dependent rect. 1 7
285 170.23 wind 5 43200 > th dose independent rect. 19 6
286 170.23 wind 5 43200 < th dose independent rect. 19 7
289 170.24 humidity 80 43200 > th dose independent rect. 22 9
301 170.34 humidity 80 43200 > th dose independent rect. 4 3
332 170.53 humidity 80 43200 < th dose independent rect. 22 4
335 170.56 temperature 30 10 < th dose dependent sin 16 NA
370 170.81 wind 3 43200 > th dose dependent rect. 5 1
373 170.84 humidity 80 43200 < th dose dependent rect. 22 1
380 170.93 humidity 80 43200 < th dose dependent rect. 5 2
385 170.98 wind 7 43200 < th dose dependent rect. 19 18
406 171.08 wind 3 43200 > th dose dependent rect. 19 11
413 171.14 wind 9 14400 < th dose independent rect. 16 1
427 171.23 wind 3 43200 > th dose dependent rect. 17 13
432 171.25 wind 7 43200 > th dose dependent rect. 21 2
442 171.30 wind 5 43200 > th dose independent rect. 17 11
446 171.32 wind 5 43200 < th dose independent rect. 17 11
455 171.35 wind 9 43200 < th dose dependent rect. 19 11
456 171.36 humidity 60 43200 > th dose independent rect. 15 19
463 171.41 wind 1 43200 > th dose dependent rect. 19 18
464 171.42 humidity 80 43200 < th dose independent rect. 1 1
466 171.42 wind 5 43200 < th dose independent rect. 17 13
471 171.44 wind 5 43200 > th dose independent rect. 17 13
520 171.62 humidity 60 43200 < th dose independent rect. 15 19
541 171.68 wind 9 43200 < th dose dependent rect. 20 4
554 171.71 wind 5 43200 > th dose independent sin 13 NA
559 171.73 wind 5 43200 < th dose independent sin 12 NA
569 171.75 wind 7 43200 < th dose dependent rect. 3 10
572 171.76 wind 3 43200 > th dose dependent sin 12 NA
599 171.83 wind 5 43200 < th dose independent rect. 16 20
601 171.83 wind 7 43200 < th dose dependent rect. 23 14
639 171.93 wind 5 43200 > th dose independent rect. 16 20
672 171.99 wind 9 43200 > th dose independent rect. 21 2
674 172.00 wind 7 43200 < th dose dependent sin 5 NA
675 172.00 radiation 20 4320 > th dose dependent rect. 6 2
770 172.14 wind 3 43200 > th dose independent rect. 4 1
794 172.18 wind 3 43200 > th dose independent rect. 3 10
886 172.37 humidity 80 43200 > th dose independent rect. 1 1
889 172.37 wind 1 43200 > th dose dependent rect. 3 10
891 172.37 wind 1 43200 > th dose dependent rect. 23 15
904 172.39 humidity 70 43200 < th dose dependent rect. 16 17
962 172.48 wind 1 43200 > th dose dependent sin 6 NA