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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0702300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S8 and S53, subtilisin, kexin, sedolisin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.025) R2 : 0.219
β1 : 0.748 (0.0955) R2dD : 0.123 R2D : 0.00612
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.24 (0.121) R2dE : 0.226 R2E : 0.0784
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.221 (0.0568) R2dN8 : 0.0408 R2N8 : -0.0463
σ : 0.459
deviance : 97.26
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 23.85
memory length : 608
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.82 0.46 3.37 0.716 0.0181 1.24 0.683 0.0974 0.222 7.91 24 651 -- --
95.77 0.456 3.37 0.729 0.0211 1.24 0.706 -- 0.22 7.94 23.8 608 -- --
96.82 0.458 3.39 0.664 0.0195 1.36 -- 0.612 0.195 4.29 23.44 593 -- --
97.22 0.459 3.37 0.748 0.038 1.23 -- -- 0.22 4.22 23.9 650 -- --
96.84 0.458 3.39 0.658 -- 1.37 -- 0.652 0.193 -- 23.4 587 -- --
117.18 0.507 3.42 0.4 0.15 -- 0.628 -- -0.00572 8.23 -- -- -- --
118.38 0.51 3.42 0.419 0.149 -- -- -- -0.00569 8.6 -- -- -- --
97.26 0.459 3.37 0.748 -- 1.24 -- -- 0.221 -- 23.85 608 -- --
110.31 0.489 3.4 -- 0.0171 0.931 -- -- 0.0946 2.44 23.9 586 -- --
119.62 0.511 3.42 0.419 -- -- -- -- -0.00435 -- -- -- -- --
123 0.519 3.43 -- 0.15 -- -- -- -0.0524 8.39 -- -- -- --
110.32 0.489 3.4 -- -- 0.927 -- -- 0.0903 -- 23.9 575 -- --
124.26 0.52 3.43 -- -- -- -- -- -0.0509 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 94.04 temperature 10 720 > th dose dependent rect. 19 14
3 94.55 temperature 10 720 > th dose dependent rect. 21 12
10 95.43 temperature 25 720 < th dose dependent rect. 17 18
17 95.70 temperature 10 720 > th dose dependent rect. 21 10
48 96.08 temperature 10 720 > th dose dependent sin 9 NA
50 96.10 temperature 10 720 > th dose dependent rect. 21 18
73 96.37 temperature 30 720 < th dose dependent sin 9 NA
83 96.44 temperature 25 720 < th dose dependent rect. 24 23
103 96.64 temperature 10 720 > th dose dependent rect. 19 20
105 96.66 temperature 25 720 < th dose dependent no NA NA
112 96.73 temperature 25 720 < th dose dependent rect. 6 23
113 96.73 temperature 25 720 < th dose dependent rect. 8 23
114 96.74 temperature 10 10 > th dose dependent rect. 21 23
126 96.81 temperature 25 720 < th dose dependent rect. 21 23
265 97.73 temperature 10 720 > th dose dependent rect. 12 21
290 97.95 temperature 10 720 > th dose dependent rect. 3 6
326 98.24 temperature 30 720 < th dose dependent rect. 23 6
352 98.43 temperature 30 720 < th dose dependent rect. 23 8
409 98.71 temperature 25 1440 < th dose dependent rect. 21 1
490 99.23 temperature 10 270 > th dose dependent rect. 1 23
507 99.29 temperature 30 720 < th dose dependent rect. 24 3
571 99.56 temperature 10 1440 > th dose dependent rect. 21 1
589 99.60 temperature 25 1440 < th dose dependent rect. 17 9
609 99.64 temperature 10 720 > th dose dependent rect. 21 23
709 99.80 temperature 10 1440 > th dose dependent rect. 20 6
774 99.88 temperature 10 720 > th dose dependent no NA NA
851 99.97 temperature 15 10 > th dose dependent rect. 3 23
962 100.11 temperature 30 1440 < th dose dependent rect. 3 1