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Os01g0702000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF151 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0373) R2 : 0.929
β1 : 1.11 (0.137) R2dD : 0.0101 R2D : 0.00442
β2 : 5.02 (0.12) R2dC : 0.439 R2C : 0.748
β3 : -2.51 (0.101) R2dE : 0.156 R2E : 0.46
β4 : -3.12 (0.415) R2dD*C : 0.00933 R2D*C : 0.00431
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.337 (0.0794) R2dN8 : 0.00373 R2N8 : 0.00414
σ : 0.696
deviance : 223.15
__
_____
C
peak time of C : 19.7
E
wheather : temperature
threshold : 20.5
memory length : 96
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.87
open length of G : 5.91

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.53 0.696 12.9 1.11 5.06 -2.53 -2.38 1.15 -0.34 19.7 20.91 94 5.95 5.88
223.15 0.696 12.9 1.11 5.02 -2.51 -3.12 -- -0.337 19.7 20.5 96 5.87 5.91
229.87 0.706 12.9 1.16 5.04 -2.54 -- 2.25 -0.328 19.7 20.92 91 5.92 5.87
251.83 0.739 12.9 1.15 5 -2.56 -- -- -0.333 19.7 20.8 95 5.83 5.92
481.76 1.02 12.9 1.36 -- -4.98 -- 2.81 -0.47 -- -5.413 156 2.77 9.65
428.85 0.971 13 0.924 6.87 -- -2.86 -- -0.388 20.4 -- -- -- --
454.64 0.999 13 1.01 6.87 -- -- -- -0.389 20.4 -- -- -- --
361.91 0.886 12.8 1.05 -- -6.44 -- -- -0.347 -- 9.508 385 0.95 9.12
287.37 0.79 12.9 -- 5.04 -2.56 -- -- -0.377 19.7 20.8 101 5.82 5.9
3088.11 2.6 12.8 0.977 -- -- -- -- -0.458 -- -- -- -- --
481.56 1.03 13 -- 6.87 -- -- -- -0.502 20.5 -- -- -- --
387.1 0.916 12.8 -- -- -6.44 -- -- -0.394 -- 9.591 390 0.933 9.07
3113.26 2.6 12.8 -- -- -- -- -- -0.566 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.67 temperature 20.0 90 > th dose independent rect. 6 6
2 232.73 humidity 50.0 270 > th dose independent rect. 17 17
3 232.97 wind 9.0 270 < th dose independent rect. 10 7
4 233.58 temperature 10.0 270 > th dose independent rect. 10 7
5 233.58 atmosphere 1015.0 270 < th dose independent rect. 10 7
6 233.58 temperature 10.0 270 > th dose independent rect. 17 17
7 233.66 wind 9.0 270 < th dose independent rect. 17 17
8 234.34 precipitation 0.1 270 < th dose independent rect. 10 7
9 234.34 precipitation 0.1 270 < th dose dependent rect. 10 7
10 234.98 humidity 50.0 270 > th dose dependent rect. 5 6
11 236.57 atmosphere 995.0 270 > th dose independent rect. 17 17
12 236.80 temperature 15.0 270 > th dose independent rect. 4 7
13 237.12 wind 1.0 270 > th dose independent rect. 10 7
14 237.17 humidity 50.0 270 > th dose independent rect. 4 7
17 237.90 atmosphere 995.0 270 > th dose independent rect. 4 7
18 237.90 atmosphere 1015.0 270 < th dose independent rect. 4 7
19 237.90 temperature 10.0 270 > th dose independent rect. 11 17
20 237.93 precipitation 0.1 270 < th dose independent rect. 4 7
21 237.93 precipitation 0.1 270 < th dose dependent rect. 4 7
22 238.55 wind 9.0 270 < th dose independent rect. 11 17
23 238.76 wind 9.0 270 < th dose independent rect. 4 7
24 239.11 humidity 50.0 270 > th dose dependent rect. 6 4
25 239.12 precipitation 0.1 270 < th dose independent rect. 17 17
26 239.12 precipitation 0.1 270 < th dose dependent rect. 17 17
27 239.36 precipitation 0.1 270 < th dose independent rect. 11 17
28 239.36 precipitation 0.1 270 < th dose dependent rect. 11 17
30 239.90 atmosphere 995.0 270 > th dose independent rect. 10 7
35 244.44 radiation 40.0 270 < th dose independent rect. 17 17
39 246.01 temperature 10.0 270 > th dose independent rect. 21 9
40 246.01 temperature 30.0 270 < th dose independent rect. 21 9
41 246.01 humidity 50.0 270 > th dose independent rect. 21 9
44 246.01 atmosphere 995.0 270 > th dose independent rect. 21 9
45 246.01 radiation 20.0 270 < th dose independent rect. 21 9
48 246.01 temperature 10.0 270 > th dose independent rect. 6 15
50 246.06 wind 9.0 270 < th dose independent rect. 21 9
51 246.63 radiation 40.0 270 < th dose dependent rect. 21 9
53 247.25 precipitation 0.1 270 < th dose independent rect. 21 9
54 247.25 precipitation 0.1 270 < th dose dependent rect. 21 9
55 247.59 temperature 30.0 270 < th dose independent rect. 4 7
57 248.54 atmosphere 1015.0 270 < th dose independent rect. 6 15
58 248.70 radiation 30.0 270 < th dose independent rect. 15 8
59 248.77 temperature 30.0 270 < th dose independent rect. 17 17
64 249.20 precipitation 0.1 90 < th dose independent rect. 6 6
65 249.20 precipitation 0.1 90 < th dose dependent rect. 6 6
67 249.52 atmosphere 995.0 90 > th dose independent rect. 6 6
68 249.52 atmosphere 1015.0 90 < th dose independent rect. 6 6
71 249.81 wind 9.0 270 < th dose independent rect. 23 16
73 250.43 radiation 1.0 90 > th dose independent rect. 6 6
74 250.53 humidity 50.0 90 > th dose independent rect. 6 6
78 250.73 temperature 10.0 270 > th dose independent rect. 15 8
79 250.73 temperature 10.0 270 > th dose independent rect. 23 16
83 251.07 radiation 1.0 270 > th dose independent rect. 10 7
84 251.09 wind 9.0 90 < th dose independent rect. 6 6
88 251.17 atmosphere 995.0 270 > th dose independent rect. 23 16
92 251.37 humidity 70.0 270 > th dose independent rect. 5 6
106 251.95 wind 9.0 270 < th dose independent rect. 15 8
126 252.23 atmosphere 995.0 270 > th dose independent rect. 11 17
130 252.52 radiation 40.0 270 < th dose dependent rect. 15 8
135 253.24 precipitation 0.1 270 < th dose independent rect. 6 15
136 253.24 precipitation 0.1 270 < th dose dependent rect. 6 15
137 253.25 precipitation 0.1 270 < th dose independent rect. 23 17
138 253.25 precipitation 0.1 270 < th dose dependent rect. 23 17
141 253.43 temperature 30.0 90 < th dose independent rect. 6 6
154 253.97 wind 9.0 270 < th dose independent rect. 6 15
161 254.04 wind 1.0 90 > th dose independent rect. 6 6
171 254.75 humidity 70.0 270 > th dose independent rect. 6 4
181 255.03 wind 1.0 270 > th dose independent rect. 16 7
207 255.39 temperature 10.0 1440 > th dose independent rect. 7 6
210 255.39 atmosphere 995.0 1440 > th dose independent rect. 7 6
211 255.39 temperature 10.0 1440 > th dose independent rect. 13 18
220 255.69 atmosphere 1015.0 270 < th dose independent rect. 24 15
264 257.06 precipitation 0.1 270 < th dose independent rect. 16 7
265 257.06 precipitation 0.1 270 < th dose dependent rect. 16 7
280 257.97 temperature 10.0 270 > th dose dependent rect. 10 7
298 258.93 radiation 1.0 270 < th dose dependent rect. 22 16
303 259.24 atmosphere 995.0 270 > th dose independent rect. 16 7
314 259.87 radiation 1.0 270 < th dose dependent rect. 22 11
417 264.40 humidity 50.0 270 > th dose independent rect. 16 7
445 264.91 radiation 40.0 270 < th dose independent rect. 5 5
460 265.16 humidity 50.0 270 > th dose independent rect. 23 16
471 265.51 wind 1.0 270 > th dose independent rect. 11 17
488 266.00 atmosphere 1015.0 270 < th dose independent rect. 16 7
507 266.83 radiation 1.0 270 < th dose dependent sin 9 NA
524 267.61 radiation 40.0 270 < th dose dependent rect. 6 3
525 267.68 radiation 1.0 270 > th dose independent rect. 11 5
535 267.99 atmosphere 1015.0 270 < th dose independent rect. 17 17
581 269.88 atmosphere 1015.0 270 < th dose independent rect. 22 8
593 270.15 radiation 1.0 270 < th dose independent rect. 22 16
641 271.76 wind 1.0 270 > th dose independent rect. 4 7
651 272.02 temperature 10.0 10 > th dose dependent rect. 6 6
663 272.27 radiation 1.0 270 > th dose independent rect. 10 19
687 272.85 radiation 40.0 270 < th dose independent rect. 5 18
708 273.21 radiation 40.0 270 < th dose independent rect. 6 16
714 273.34 humidity 90.0 270 < th dose independent rect. 10 7
740 273.93 atmosphere 1015.0 90 < th dose independent rect. 12 18
742 273.96 radiation 40.0 270 < th dose dependent rect. 6 17
747 274.11 atmosphere 995.0 270 > th dose independent rect. 5 17
761 275.04 radiation 40.0 30 < th dose independent rect. 12 18
776 275.41 wind 1.0 270 > th dose independent rect. 6 16
816 276.41 humidity 90.0 30 < th dose independent rect. 6 6
840 277.08 humidity 50.0 270 > th dose independent rect. 11 5
851 277.25 radiation 40.0 270 < th dose dependent rect. 17 17
880 277.87 humidity 50.0 270 > th dose dependent rect. 17 17
909 278.51 wind 9.0 270 < th dose dependent rect. 22 7
984 280.35 wind 1.0 270 > th dose independent rect. 17 17
994 280.41 humidity 90.0 270 < th dose independent rect. 11 5
997 280.50 wind 9.0 10 < th dose independent rect. 12 7
1000 280.54 radiation 1.0 270 < th dose independent sin 9 NA