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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0701400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 44.4 (2.44) R2 : 0.394
β1 : -253 (14.9) R2dD : 20900 R2D : -30400
β2 : -- (--) R2dC : -- R2C : --
β3 : 18200 (1070) R2dE : 3960000 R2E : -3970000
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -111000 (6570) R2dD*E : 3970000 R2D*E : -3960000
γ1 : 0.0629 (0.0378) R2dN8 : 0.00491 R2N8 : -9430
σ : 0.331
deviance : 50.66
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 90
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.37 0.331 44.4 -253 0.0671 18200 -0.0305 -111000 0.0624 23.5 1000 90 20 1
330746766.33 847 37.8 -109 1.51 18200 22.7 -- 1.51 8.91 999 93 19.6 0.505
50.37 0.331 44.4 -253 0.0673 18200 -- -111000 0.0624 23.5 1000 90 20 1
323741044.14 838 -45.7 -102 197 18000 -- -- 239 6.91 995.4 123 19.6 0.18
50.66 0.331 44.4 -253 -- 18200 -- -111000 0.0629 -- 1000 90 20 1
81.63 0.424 3.07 0.201 0.113 -- 0.0741 -- 0.0504 22.7 -- -- -- --
81.65 0.423 3.07 0.198 0.112 -- -- -- 0.0502 22.7 -- -- -- --
325059015.21 840 -45.4 -103 -- 18000 -- -- 238 -- 998.4 173 18 1.1
323386018.65 838 -46.5 -- 198 18000 -- -- 238 6.12 994.6 197 16.1 2.04
82.43 0.424 3.06 0.201 -- -- -- -- 0.0508 -- -- -- -- --
82.69 0.425 3.07 -- 0.114 -- -- -- 0.0281 22.8 -- -- -- --
249028010.12 735 165 -- -- 14600 -- -- -620 -- 994.7 180 13.6 24
83.49 0.427 3.07 -- -- -- -- -- 0.0286 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.37 atmosphere 1000.0 90 < th dose independent rect. 20 1
2 50.37 atmosphere 1000.0 10 < th dose independent rect. 21 1
20 50.37 atmosphere 1000.0 90 < th dose dependent rect. 20 1
21 50.37 atmosphere 1000.0 10 < th dose dependent rect. 21 1
50 52.35 wind 1.0 90 < th dose dependent rect. 20 1
53 52.52 wind 1.0 90 < th dose dependent rect. 16 5
55 59.20 wind 1.0 90 < th dose independent rect. 16 5
56 59.52 wind 1.0 90 < th dose independent rect. 20 1
112 68.18 wind 1.0 30 < th dose dependent rect. 2 1
114 68.50 wind 1.0 10 < th dose independent rect. 2 1
117 68.56 temperature 25.0 10 < th dose independent rect. 2 1
119 68.62 temperature 30.0 30 < th dose dependent rect. 2 1
122 68.70 humidity 80.0 10 > th dose independent rect. 2 1
126 68.80 humidity 70.0 10 > th dose dependent rect. 2 1
127 68.80 atmosphere 995.0 10 > th dose dependent rect. 2 1
137 68.84 atmosphere 1005.0 10 > th dose independent rect. 2 1
141 68.86 wind 5.0 30 < th dose independent rect. 2 1
145 68.87 temperature 10.0 30 > th dose independent rect. 2 1
148 68.87 humidity 50.0 30 > th dose independent rect. 2 1
151 68.87 atmosphere 995.0 30 > th dose independent rect. 2 1
152 68.87 atmosphere 1010.0 30 < th dose independent rect. 2 1
154 68.87 radiation 1.0 30 < th dose independent rect. 2 1
159 68.87 precipitation 0.1 30 < th dose independent rect. 2 1
160 68.87 temperature 10.0 30 > th dose independent rect. 3 23
162 68.87 radiation 1.0 30 < th dose dependent rect. 2 1
167 68.87 precipitation 0.1 30 < th dose dependent rect. 2 1
170 68.89 atmosphere 1015.0 30 < th dose dependent rect. 2 1
203 68.99 temperature 10.0 30 > th dose dependent rect. 2 1
208 69.16 wind 9.0 30 < th dose independent rect. 3 23
216 69.36 wind 1.0 30 > th dose independent rect. 2 1
242 72.00 atmosphere 1000.0 30 > th dose independent rect. 3 23
258 72.76 precipitation 0.1 30 < th dose independent rect. 3 23
260 72.76 precipitation 0.1 30 < th dose dependent rect. 3 23
300 73.98 humidity 50.0 30 > th dose independent rect. 3 23
309 74.24 radiation 1.0 43200 < th dose dependent rect. 3 1
311 74.28 wind 9.0 1440 < th dose independent rect. 3 1
312 74.28 temperature 10.0 1440 > th dose independent rect. 3 1
315 74.28 temperature 30.0 1440 < th dose independent rect. 3 1
319 74.28 humidity 50.0 1440 > th dose independent rect. 3 1
328 74.28 atmosphere 995.0 1440 > th dose independent rect. 3 1
329 74.28 radiation 1.0 1440 < th dose independent rect. 3 1
349 74.28 temperature 10.0 1440 > th dose independent rect. 4 23
352 74.28 radiation 1.0 1440 < th dose dependent rect. 3 1
471 76.03 temperature 30.0 30 < th dose independent rect. 3 23
474 76.05 atmosphere 1015.0 30 < th dose independent rect. 3 23
479 76.09 wind 1.0 30 > th dose dependent rect. 2 1
490 76.19 temperature 30.0 720 < th dose independent rect. 12 3
536 76.41 humidity 90.0 10 < th dose independent rect. 21 1
580 76.53 humidity 90.0 90 < th dose independent rect. 2 1
587 76.54 humidity 50.0 30 > th dose dependent rect. 3 23
596 76.64 wind 1.0 90 < th dose dependent rect. 16 11
599 76.65 wind 1.0 90 < th dose dependent rect. 20 7
646 76.89 wind 1.0 90 < th dose dependent sin 18 NA
668 77.05 atmosphere 995.0 30 > th dose dependent rect. 3 23
673 77.10 wind 1.0 30 > th dose independent rect. 3 23
675 77.11 atmosphere 1000.0 30 < th dose independent sin 14 NA
681 77.13 wind 1.0 30 < th dose independent rect. 21 6
686 77.13 wind 1.0 30 < th dose independent rect. 15 12
688 77.14 atmosphere 1000.0 30 > th dose independent sin 14 NA
715 77.22 humidity 60.0 720 > th dose independent rect. 12 3
745 77.31 atmosphere 1015.0 1440 < th dose independent rect. 3 1
755 77.36 temperature 25.0 720 > th dose dependent rect. 15 1
784 77.47 temperature 30.0 720 > th dose independent rect. 10 6
789 77.49 radiation 30.0 720 > th dose dependent rect. 15 1
791 77.49 radiation 30.0 720 > th dose dependent rect. 15 17
832 77.54 wind 1.0 10 > th dose independent sin 14 NA
835 77.54 temperature 25.0 270 > th dose independent rect. 23 4
854 77.59 radiation 20.0 30 < th dose dependent rect. 3 23
860 77.61 wind 1.0 90 < th dose independent sin 18 NA
882 77.64 temperature 25.0 1440 > th dose independent rect. 1 1
919 77.67 temperature 30.0 720 < th dose independent rect. 3 12
923 77.68 temperature 25.0 90 > th dose independent rect. 20 1
955 77.76 radiation 30.0 720 > th dose independent rect. 15 1
961 77.77 temperature 30.0 720 > th dose independent rect. 13 2
967 77.77 temperature 30.0 720 < th dose independent rect. 2 15
978 77.79 radiation 1.0 30 < th dose independent rect. 3 23
993 77.83 atmosphere 1000.0 30 > th dose independent rect. 12 13
999 77.84 temperature 30.0 720 < th dose independent rect. 11 13