Os01g0700100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MtN3 and saliva related transmembrane protein family protein.
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Os01g0700100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MtN3 and saliva related transmembrane protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 419.56 | 0.962 | 9.11 | -0.0425 | 10 | -4.16 | 3.09 | -0.712 | 0.13 | 6.21 | 7.719 | 237 | 13.1 | 20.2 |
| 419.35 | 0.954 | 9.11 | 0.0183 | 10 | -4.18 | 3.05 | -- | 0.125 | 6.19 | 6.497 | 241 | 13 | 20.2 |
| 440.56 | 0.978 | 9.12 | -0.0815 | 10 | -4.23 | -- | -1.24 | 0.118 | 6.13 | 4.467 | 257 | 12.7 | 20.5 |
| 441.65 | 0.979 | 9.1 | 0.0769 | 10 | -4.2 | -- | -- | 0.177 | 6.14 | 4.481 | 258 | 12.7 | 20.5 |
| 3510.63 | 2.76 | 8.89 | 1.89 | -- | -11.2 | -- | 5.4 | 0.876 | -- | 24.6 | 454 | 11.8 | 23 |
| 683.75 | 1.23 | 9.17 | -0.546 | 10.5 | -- | 4.03 | -- | -0.34 | 6.74 | -- | -- | -- | -- |
| 725.11 | 1.26 | 9.18 | -0.481 | 10.6 | -- | -- | -- | -0.351 | 6.73 | -- | -- | -- | -- |
| 1783.52 | 1.97 | 9.18 | 0.676 | -- | -11.4 | -- | -- | 1.6 | -- | 12.5 | 320 | 8.48 | 15.8 |
| 441.61 | 0.979 | 9.1 | -- | 10.1 | -4.2 | -- | -- | 0.154 | 6.12 | 3.189 | 259 | 12.7 | 20.6 |
| 6543.44 | 3.78 | 9.4 | -0.24 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 731.21 | 1.26 | 9.17 | -- | 10.5 | -- | -- | -- | -0.298 | 6.74 | -- | -- | -- | -- |
| 739.85 | 1.27 | 9.19 | -- | -- | -9.14 | -- | -- | 0.705 | -- | -11.97 | 299 | 11.2 | 10.5 |
| 6544.96 | 3.78 | 9.39 | -- | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 427.31 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 7 | 442.49 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 8 |
| 11 | 444.07 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 19 |
| 23 | 450.39 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 27 | 453.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 28 | 453.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 15 | 19 |
| 96 | 469.65 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 100 | 470.68 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 125 | 477.05 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 131 | 478.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 9 |
| 140 | 480.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 19 |
| 141 | 480.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 19 |
| 153 | 482.75 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 155 | 483.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 157 | 483.11 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 158 | 483.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 162 | 483.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 5 |
| 163 | 483.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 5 |
| 189 | 486.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 197 | 487.68 | wind | 9.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 199 | 487.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 209 | 488.47 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 215 | 489.03 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 9 | 4 |
| 237 | 491.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 238 | 491.11 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 242 | 491.26 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 15 | 19 |
| 244 | 491.41 | humidity | 50.0 | 270 | > th | dose independent | rect. | 8 | 5 |
| 265 | 492.29 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 283 | 493.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 7 |
| 284 | 493.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 293 | 494.64 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 294 | 494.64 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 347 | 498.39 | radiation | 1.0 | 10 | > th | dose independent | rect. | 10 | 6 |
| 350 | 498.44 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 17 |
| 361 | 498.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 17 |
| 362 | 498.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 17 |
| 408 | 500.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 409 | 500.97 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 17 |
| 410 | 500.98 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 10 | 5 |
| 419 | 501.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 421 | 501.33 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 18 |
| 447 | 502.36 | humidity | 60.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 456 | 503.24 | wind | 1.0 | 270 | > th | dose independent | rect. | 20 | 17 |
| 462 | 503.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 465 | 503.47 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 466 | 503.47 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 467 | 503.47 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 16 |
| 469 | 503.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 473 | 503.73 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 4 |
| 485 | 504.17 | wind | 9.0 | 10 | < th | dose independent | rect. | 15 | 19 |
| 513 | 505.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 8 |
| 514 | 505.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 532 | 506.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 560 | 507.31 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 6 |
| 566 | 507.50 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 15 | 19 |
| 582 | 507.93 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 10 | 17 |
| 587 | 507.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 602 | 508.19 | temperature | 10.0 | 10 | > th | dose independent | rect. | 10 | 5 |
| 605 | 508.19 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 10 | 5 |
| 606 | 508.19 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 10 | 5 |
| 608 | 508.19 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 10 | 5 |
| 609 | 508.23 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 632 | 508.96 | temperature | 15.0 | 10 | > th | dose dependent | sin | 11 | NA |
| 647 | 509.31 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 679 | 510.33 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 20 | 17 |
| 683 | 510.44 | radiation | 1.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 704 | 511.00 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 15 | 19 |
| 705 | 511.00 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 15 | 19 |
| 721 | 511.24 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 8 |
| 736 | 511.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 16 |
| 744 | 512.03 | wind | 9.0 | 10 | < th | dose independent | rect. | 10 | 5 |
| 748 | 512.08 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 10 | 6 |
| 751 | 512.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 761 | 512.28 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 786 | 512.88 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 797 | 513.09 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 801 | 513.09 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 19 |
| 806 | 513.13 | temperature | 30.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 832 | 513.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 843 | 514.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 844 | 514.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 849 | 514.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 850 | 514.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 853 | 514.09 | humidity | 90.0 | 90 | < th | dose independent | rect. | 10 | 5 |
| 869 | 514.34 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 882 | 514.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 887 | 514.77 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 890 | 514.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 908 | 515.14 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 910 | 515.14 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 939 | 515.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 16 |
| 941 | 515.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 992 | 516.68 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 999 | 516.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 7 |