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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0699600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.53 (0.0757) R2 : 0.238
β1 : 0.482 (0.282) R2dD : 0.00532 R2D : -0.032
β2 : 0.925 (0.192) R2dC : 0.04 R2C : 0.0323
β3 : 7.5 (0.972) R2dE : 0.107 R2E : 0.0728
β4 : 3.13 (0.804) R2dD*C : 0.0258 R2D*C : -0.00444
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.12 (0.162) R2dN8 : 0.109 R2N8 : 0.0602
σ : 1.41
deviance : 915.92
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_____
C
peak time of C : 20.4
E
wheather : wind
threshold : 6.208
memory length : 71
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.76
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
915.86 1.42 5.54 0.496 0.914 8.1 3.13 2.81 1.12 20.4 6.255 72 4.86 --
915.92 1.41 5.53 0.482 0.925 7.5 3.13 -- 1.12 20.4 6.208 71 4.76 --
941.27 1.43 5.55 0.393 0.964 8 -- 3.12 1.09 19.6 6.134 67 4.53 --
941.18 1.43 5.52 0.365 1.01 7.17 -- -- 1.13 19.4 6.187 67 4.39 --
982.13 1.46 5.57 0.487 -- 6.21 -- 5.1 0.993 -- 4.481 65 7.11 --
1034.88 1.51 5.57 0.0745 1.17 -- 2.37 -- 0.976 20.1 -- -- -- --
1049.29 1.52 5.57 0.0159 1.21 -- -- -- 0.982 19.4 -- -- -- --
985.63 1.46 5.52 0.374 -- 4.73 -- -- 1.02 -- 4.064 60 8 --
945.07 1.43 5.54 -- 1 6.93 -- -- 1.08 19.5 6.151 67 4.42 --
1126.8 1.57 5.54 -0.00328 -- -- -- -- 0.963 -- -- -- -- --
1049.3 1.52 5.57 -- 1.21 -- -- -- 0.981 19.4 -- -- -- --
989.22 1.46 5.53 -- -- 4.76 -- -- 0.979 -- 4.083 60 7.75 --
1126.8 1.57 5.54 -- -- -- -- -- 0.963 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 900.48 wind 3.0 43200 < th dose independent rect. 13 1
2 902.22 wind 3.0 43200 > th dose independent rect. 13 1
3 902.75 wind 3.0 43200 < th dose independent rect. 12 3
4 903.84 wind 1.0 43200 < th dose dependent rect. 11 1
7 904.81 wind 3.0 43200 > th dose independent rect. 12 3
12 906.50 wind 3.0 43200 < th dose independent rect. 10 7
15 906.83 wind 5.0 43200 < th dose dependent rect. 13 1
16 906.95 wind 3.0 43200 < th dose independent rect. 11 13
19 907.26 wind 3.0 43200 > th dose independent rect. 11 5
22 907.44 wind 3.0 43200 > th dose independent rect. 12 12
23 907.55 wind 3.0 43200 < th dose dependent rect. 9 6
25 907.76 wind 3.0 43200 < th dose dependent rect. 8 16
39 908.37 wind 3.0 43200 < th dose dependent rect. 8 8
58 908.88 wind 3.0 43200 < th dose independent sin 19 NA
73 909.42 wind 3.0 43200 > th dose independent sin 19 NA
76 909.54 radiation 1.0 14400 > th dose independent rect. 18 12
106 910.14 humidity 90.0 43200 > th dose dependent rect. 12 5
119 910.36 radiation 10.0 4320 < th dose dependent rect. 21 8
135 910.97 wind 1.0 43200 > th dose independent rect. 8 4
150 911.32 wind 5.0 43200 > th dose independent rect. 8 1
154 911.40 precipitation 0.1 14400 < th dose independent rect. 13 1
156 911.40 precipitation 0.1 14400 < th dose dependent rect. 13 1
162 911.48 wind 5.0 43200 < th dose independent rect. 8 1
191 912.10 wind 5.0 43200 < th dose dependent rect. 12 13
211 912.62 wind 3.0 43200 < th dose dependent sin 21 NA
227 913.02 humidity 90.0 43200 < th dose independent rect. 13 1
238 913.17 radiation 1.0 14400 < th dose independent rect. 18 13
242 913.29 humidity 90.0 14400 > th dose independent rect. 23 19
259 913.61 humidity 90.0 43200 < th dose independent rect. 11 7
262 913.64 wind 5.0 43200 < th dose dependent rect. 10 10
276 913.85 wind 5.0 43200 < th dose dependent rect. 12 9
282 913.93 humidity 90.0 43200 > th dose dependent rect. 9 8
290 914.07 precipitation 0.1 14400 > th dose independent rect. 13 1
364 915.11 radiation 1.0 14400 > th dose independent rect. 16 16
368 915.15 humidity 90.0 43200 > th dose independent rect. 9 9
374 915.23 radiation 1.0 14400 > th dose independent sin 12 NA
387 915.29 humidity 90.0 14400 > th dose dependent rect. 2 16
389 915.31 humidity 90.0 43200 > th dose independent rect. 11 7
422 915.74 wind 3.0 43200 < th dose dependent rect. 19 6
444 916.00 wind 1.0 43200 < th dose independent rect. 8 4
452 916.09 radiation 1.0 14400 > th dose independent rect. 12 20
459 916.15 radiation 1.0 14400 < th dose independent sin 11 NA
470 916.24 radiation 1.0 14400 < th dose independent rect. 16 16
490 916.47 radiation 1.0 14400 > th dose independent rect. 18 1
513 916.57 humidity 90.0 43200 > th dose dependent rect. 16 1
548 916.86 radiation 1.0 14400 > th dose independent rect. 16 23
551 916.87 radiation 1.0 14400 < th dose independent rect. 11 21
574 917.13 temperature 30.0 43200 < th dose dependent rect. 13 1
578 917.17 atmosphere 1010.0 14400 > th dose independent rect. 13 1
584 917.22 humidity 90.0 43200 > th dose independent rect. 12 5
585 917.22 radiation 1.0 14400 > th dose independent rect. 18 21
595 917.26 atmosphere 1015.0 43200 < th dose independent rect. 12 1
602 917.31 radiation 1.0 14400 > th dose independent rect. 18 23
611 917.35 humidity 90.0 14400 > th dose dependent rect. 5 2
620 917.40 temperature 30.0 43200 < th dose dependent rect. 10 2
621 917.41 atmosphere 1010.0 14400 < th dose independent rect. 14 1
625 917.42 radiation 1.0 14400 > th dose independent no NA NA
627 917.42 radiation 1.0 14400 > th dose independent rect. 4 15
675 917.43 temperature 25.0 43200 < th dose dependent rect. 14 9
679 917.45 temperature 25.0 43200 < th dose dependent rect. 13 11
680 917.46 temperature 30.0 43200 < th dose dependent rect. 13 4
693 917.49 temperature 30.0 43200 < th dose dependent rect. 10 8
707 917.51 temperature 30.0 43200 < th dose dependent rect. 10 4
710 917.52 wind 3.0 43200 > th dose dependent rect. 8 1
714 917.53 temperature 25.0 43200 < th dose dependent rect. 17 1
719 917.55 humidity 90.0 43200 > th dose independent rect. 12 2
761 917.64 radiation 1.0 14400 < th dose independent rect. 16 23
762 917.64 temperature 25.0 43200 < th dose dependent sin 18 NA
887 917.90 temperature 25.0 43200 < th dose dependent rect. 21 1
893 917.91 radiation 1.0 14400 > th dose independent rect. 4 4
898 917.91 radiation 1.0 14400 < th dose independent rect. 24 8
908 917.92 humidity 90.0 14400 > th dose independent rect. 12 18
952 918.01 radiation 1.0 14400 < th dose independent rect. 3 5
966 918.03 radiation 1.0 14400 < th dose independent rect. 24 22
967 918.03 radiation 1.0 14400 < th dose independent rect. 18 23
977 918.04 radiation 1.0 14400 < th dose independent rect. 4 21
986 918.05 radiation 1.0 14400 < th dose independent no NA NA
987 918.05 radiation 1.0 14400 < th dose independent rect. 24 19
992 918.05 radiation 1.0 14400 < th dose independent rect. 20 23
1000 918.06 radiation 1.0 14400 < th dose independent rect. 4 18