Os01g0699500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0699500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein kinase-like domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 484.2 | 1.03 | 8.01 | -2.18 | 0.927 | 1.63 | 1.52 | -5.19 | 0.555 | 5.95 | 15.49 | 3549 | -- | -- |
| 508.35 | 1.05 | 7.88 | -1.23 | 0.897 | 1.82 | 1.6 | -- | 0.666 | 5.88 | 7.099 | 9285 | -- | -- |
| 489.47 | 1.03 | 8.03 | -2.29 | 0.947 | 1.6 | -- | -5.42 | 0.517 | 6.17 | 17.16 | 3548 | -- | -- |
| 513.88 | 1.06 | 7.88 | -1.23 | 0.927 | 1.83 | -- | -- | 0.662 | 6 | 5.187 | 9301 | -- | -- |
| 533.46 | 1.08 | 8.04 | -2.21 | -- | 1.68 | -- | -5.09 | 0.533 | -- | 14.77 | 2844 | -- | -- |
| 560.98 | 1.11 | 7.76 | -0.237 | 0.916 | -- | 1.55 | -- | 1.22 | 5.63 | -- | -- | -- | -- |
| 566.89 | 1.11 | 7.76 | -0.229 | 0.926 | -- | -- | -- | 1.22 | 5.71 | -- | -- | -- | -- |
| 552.72 | 1.09 | 7.85 | -1.02 | -- | 1.78 | -- | -- | 0.884 | -- | 9.747 | 4157 | -- | -- |
| 532.61 | 1.07 | 7.81 | -- | 0.924 | 1.3 | -- | -- | 0.991 | 5.94 | 0.7266 | 3605 | -- | -- |
| 611.34 | 1.16 | 7.77 | -0.2 | -- | -- | -- | -- | 1.24 | -- | -- | -- | -- | -- |
| 568.27 | 1.12 | 7.75 | -- | 0.922 | -- | -- | -- | 1.24 | 5.72 | -- | -- | -- | -- |
| 570.07 | 1.11 | 7.82 | -- | -- | 1.3 | -- | -- | 1.05 | -- | 7.903 | 2781 | -- | -- |
| 612.4 | 1.16 | 7.77 | -- | -- | -- | -- | -- | 1.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 467.60 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 3 | 467.88 | wind | 7 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 5 | 467.96 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 6 | 468.06 | wind | 7 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 11 | 468.41 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 36 | 469.38 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 42 | 469.52 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 58 | 469.85 | radiation | 40 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 59 | 469.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 70 | 470.09 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 75 | 470.18 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 100 | 470.61 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 106 | 470.65 | radiation | 20 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 107 | 470.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 112 | 470.72 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 24 | 2 |
| 162 | 471.42 | wind | 7 | 43200 | < th | dose dependent | rect. | 10 | 11 |
| 183 | 471.64 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 186 | 471.65 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 192 | 471.69 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 194 | 471.70 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 202 | 471.74 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 206 | 471.76 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 215 | 471.79 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 224 | 471.85 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 248 | 471.95 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 274 | 472.03 | radiation | 30 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 276 | 472.04 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 285 | 472.08 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 294 | 472.15 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 321 | 472.26 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 330 | 472.28 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 349 | 472.33 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 350 | 472.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 358 | 472.35 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 1 | 18 |
| 384 | 472.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 386 | 472.42 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 387 | 472.42 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 397 | 472.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 410 | 472.47 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 458 | 472.56 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 543 | 472.70 | wind | 7 | 43200 | < th | dose dependent | sin | 21 | NA |
| 545 | 472.70 | radiation | 40 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 598 | 472.82 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 604 | 472.83 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 635 | 472.90 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 650 | 472.92 | wind | 5 | 43200 | < th | dose independent | sin | 21 | NA |
| 674 | 472.96 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 686 | 472.98 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 690 | 472.98 | atmosphere | 1015 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 756 | 473.07 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 774 | 473.09 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 784 | 473.12 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 1 | NA |
| 786 | 473.12 | atmosphere | 995 | 43200 | > th | dose dependent | sin | 17 | NA |
| 799 | 473.14 | wind | 1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 834 | 473.20 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 892 | 473.28 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 908 | 473.29 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 1 | NA |
| 920 | 473.30 | atmosphere | 1015 | 43200 | < th | dose dependent | sin | 17 | NA |
| 929 | 473.31 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 973 | 473.37 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |