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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0699400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.1 (0.0587) R2 : 0.558
β1 : -2.36 (0.22) R2dD : 0.129 R2D : 0.207
β2 : 0.707 (0.157) R2dC : 0.0248 R2C : 0.0955
β3 : 5.4 (0.422) R2dE : 0.215 R2E : 0.364
β4 : -2.7 (0.546) R2dD*C : 0.019 R2D*C : 0.0586
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.19 (0.129) R2dN8 : 0.00277 R2N8 : -0.00143
σ : 1.09
deviance : 546.89
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_____
C
peak time of C : 13
E
wheather : temperature
threshold : 25.41
memory length : 411
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.67
open length of G : 4

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
546.25 1.1 4.12 -2.53 0.787 5.48 -2.81 1.47 0.123 13 24.92 418 6.7 3.86
546.89 1.09 4.1 -2.36 0.707 5.4 -2.7 -- 0.19 13 25.41 411 6.67 4
564.33 1.11 4.07 -2.17 0.603 5.05 -- -2.02 0.239 13.3 25.88 439 5.83 5.23
568.6 1.11 4.1 -2.43 0.639 5.53 -- -- 0.217 13.5 25.46 433 6.6 4.03
565.6 1.11 4.11 -2.21 -- 4.84 -- -2.83 0.267 -- 28.18 457 6.78 3.62
721.45 1.26 4.19 -3.07 1.65 -- -3.79 -- -0.277 12.6 -- -- -- --
782.98 1.31 4.2 -3.22 1.66 -- -- -- -0.296 12.6 -- -- -- --
582.81 1.12 4.1 -2.49 -- 5.48 -- -- 0.265 -- 27.44 448 6.9 3.67
718.6 1.25 4.04 -- 0.495 6.53 -- -- 0.551 14 25 484 6.53 3.75
955.08 1.44 4.23 -3.28 -- -- -- -- -0.325 -- -- -- -- --
1055.78 1.52 4.12 -- 1.71 -- -- -- 0.0625 12.7 -- -- -- --
729.51 1.26 4.02 -- -- 6.89 -- -- 0.612 -- 25.65 490 6.72 3.7
1238.13 1.64 4.15 -- -- -- -- -- 0.0389 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 560.28 temperature 25 270 < th dose dependent rect. 7 4
3 564.55 temperature 30 270 < th dose dependent rect. 9 2
9 568.54 temperature 10 720 > th dose dependent rect. 2 7
18 571.30 temperature 30 720 < th dose dependent rect. 1 6
21 571.46 temperature 20 720 < th dose dependent rect. 3 2
33 573.50 temperature 30 720 < th dose dependent rect. 24 11
64 576.92 temperature 20 720 < th dose independent rect. 1 6
73 577.61 temperature 20 720 > th dose independent rect. 2 7
115 581.32 temperature 25 270 < th dose independent rect. 8 4
146 583.47 temperature 25 270 < th dose independent rect. 9 2
182 586.08 wind 7 270 < th dose independent rect. 12 23
305 594.64 temperature 10 720 > th dose dependent sin 7 NA
317 595.12 temperature 25 720 < th dose dependent sin 6 NA
324 595.63 temperature 30 10 < th dose dependent rect. 10 4
344 596.85 temperature 20 720 < th dose independent rect. 5 1
410 599.97 wind 9 270 < th dose independent sin 9 NA
417 600.10 temperature 10 270 > th dose dependent rect. 4 14
463 602.14 wind 9 270 > th dose independent sin 9 NA
488 603.20 wind 7 270 < th dose independent rect. 3 15
570 606.94 wind 7 270 > th dose dependent sin 9 NA
590 607.75 wind 7 270 > th dose dependent rect. 17 20
636 609.38 wind 7 270 > th dose independent rect. 18 20
674 610.61 wind 7 720 > th dose dependent sin 3 NA
703 611.43 wind 9 720 > th dose independent sin 7 NA
735 612.29 temperature 20 720 > th dose independent sin 7 NA
756 612.91 wind 9 720 < th dose independent sin 5 NA
763 613.16 temperature 20 720 < th dose independent sin 7 NA
764 613.17 wind 7 720 < th dose independent rect. 6 18
774 613.45 wind 7 720 > th dose dependent rect. 9 7
810 614.02 wind 9 720 > th dose dependent rect. 19 21
871 615.33 wind 7 270 > th dose dependent rect. 19 16
898 615.71 wind 7 720 > th dose dependent rect. 10 3
907 615.93 wind 7 720 < th dose independent rect. 21 20
957 616.41 wind 7 720 < th dose independent rect. 6 9