Os01g0698800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0698800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.5 | 0.664 | 3.13 | -0.0554 | 0.252 | 5.34 | -0.42 | 0.764 | 0.324 | 5.32 | 9.2 | 652 | -- | -- |
| 199.53 | 0.658 | 3.13 | -0.0584 | 0.247 | 5.18 | -0.44 | -- | 0.317 | 5.32 | 9.201 | 652 | -- | -- |
| 199.93 | 0.659 | 3.13 | -0.0564 | 0.25 | 5.33 | -- | 0.883 | 0.324 | 5.35 | 9.2 | 652 | -- | -- |
| 199.96 | 0.659 | 3.13 | -0.066 | 0.25 | 5.15 | -- | -- | 0.326 | 5.32 | 9.2 | 652 | -- | -- |
| 203.12 | 0.664 | 3.14 | -0.0488 | -- | 5.32 | -- | 1.11 | 0.327 | -- | 9.2 | 652 | -- | -- |
| 317.59 | 0.835 | 3.17 | -0.49 | 0.175 | -- | -0.237 | -- | 0.155 | 1.56 | -- | -- | -- | -- |
| 317.78 | 0.835 | 3.17 | -0.483 | 0.179 | -- | -- | -- | 0.156 | 2.11 | -- | -- | -- | -- |
| 202.6 | 0.663 | 3.13 | -0.0781 | -- | 5.11 | -- | -- | 0.323 | -- | 9.6 | 652 | -- | -- |
| 200.08 | 0.659 | 3.13 | -- | 0.251 | 5.19 | -- | -- | 0.331 | 5.34 | 9.2 | 652 | -- | -- |
| 319.69 | 0.835 | 3.17 | -0.475 | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
| 323.93 | 0.842 | 3.16 | -- | 0.169 | -- | -- | -- | 0.21 | 2.05 | -- | -- | -- | -- |
| 202.76 | 0.663 | 3.13 | -- | -- | 5.15 | -- | -- | 0.328 | -- | 9.6 | 653 | -- | -- |
| 325.65 | 0.842 | 3.16 | -- | -- | -- | -- | -- | 0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.79 | wind | 9 | 270 | < th | dose independent | sin | 11 | NA |
| 2 | 189.32 | wind | 9 | 270 | > th | dose independent | sin | 11 | NA |
| 3 | 189.87 | wind | 9 | 270 | > th | dose dependent | sin | 11 | NA |
| 4 | 190.57 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 7 | 192.34 | wind | 9 | 720 | > th | dose dependent | rect. | 14 | 3 |
| 9 | 194.21 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 13 | 196.41 | wind | 9 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 20 | 197.92 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 28 | 198.01 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 47 | 198.92 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 3 |
| 49 | 199.28 | wind | 9 | 270 | > th | dose independent | rect. | 17 | 9 |
| 62 | 200.09 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 5 |
| 67 | 200.38 | wind | 9 | 720 | > th | dose independent | rect. | 19 | 22 |
| 68 | 200.40 | wind | 9 | 720 | > th | dose dependent | sin | 19 | NA |
| 69 | 200.44 | wind | 9 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 98 | 201.04 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 117 | 201.62 | wind | 9 | 270 | > th | dose independent | rect. | 17 | 6 |
| 123 | 201.77 | wind | 9 | 720 | > th | dose dependent | no | NA | NA |
| 139 | 201.77 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 155 | 201.79 | wind | 9 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 200 | 202.58 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 15 |
| 208 | 202.69 | wind | 9 | 270 | > th | dose dependent | rect. | 17 | 6 |
| 211 | 202.70 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 12 |
| 215 | 202.99 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 23 |
| 216 | 203.04 | wind | 9 | 720 | < th | dose independent | no | NA | NA |
| 223 | 203.28 | wind | 9 | 720 | < th | dose independent | sin | 20 | NA |
| 259 | 203.98 | wind | 9 | 720 | > th | dose independent | no | NA | NA |
| 275 | 203.98 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 22 |
| 339 | 204.41 | wind | 9 | 720 | > th | dose independent | sin | 20 | NA |
| 352 | 204.65 | wind | 9 | 30 | > th | dose independent | sin | 12 | NA |
| 408 | 205.44 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 16 |
| 664 | 214.72 | wind | 9 | 30 | < th | dose independent | sin | 12 | NA |
| 697 | 216.19 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 9 |
| 968 | 222.37 | wind | 9 | 720 | < th | dose independent | rect. | 9 | 16 |