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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0698500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.36 (0.0391) R2 : 0.355
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.83 (0.124) R2dE : 0.378 R2E : -0.0911
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.27 (0.0909) R2dN8 : 0.447 R2N8 : -0.0229
σ : 0.71
deviance : 232.15
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.2
memory length : 15763
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
206.68 0.675 4.28 0.531 0.53 -2.17 1.69 -3.07 -0.995 3.19 1.674 10100 -- --
214.86 0.683 4.33 -0.191 0.844 -1.93 1.82 -- -1.14 2.99 2.219 11783 -- --
215.02 0.683 4.28 0.534 0.498 -2.07 -- -2.87 -0.968 3.42 1.67 10033 -- --
217.8 0.687 4.33 -0.295 0.861 -1.91 -- -- -1.16 2.91 2.211 13234 -- --
227.31 0.702 4.29 0.53 -- -2.23 -- -3.11 -1.02 -- 1.68 10004 -- --
300.22 0.812 4.2 0.147 0.598 -- 1.79 -- -0.583 3.24 -- -- -- --
310.32 0.825 4.2 0.112 0.616 -- -- -- -0.594 3.67 -- -- -- --
240.23 0.722 4.33 -0.135 -- -2.03 -- -- -1.17 -- 1.99 10012 -- --
220.42 0.691 4.33 -- 0.876 -1.95 -- -- -1.15 3.3 2.22 13251 -- --
331.39 0.851 4.21 0.137 -- -- -- -- -0.577 -- -- -- -- --
310.65 0.824 4.21 -- 0.619 -- -- -- -0.606 3.67 -- -- -- --
232.15 0.71 4.36 -- -- -1.83 -- -- -1.27 -- 2.2 15763 -- --
331.89 0.85 4.21 -- -- -- -- -- -0.593 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.03 wind 5.0 43200 < th dose independent rect. 8 5
2 199.20 wind 5.0 43200 < th dose independent rect. 5 8
3 199.28 wind 5.0 43200 > th dose independent rect. 8 5
5 199.40 wind 5.0 43200 > th dose independent rect. 9 3
6 199.47 wind 5.0 43200 < th dose independent rect. 9 3
8 199.63 wind 5.0 43200 > th dose independent rect. 5 8
17 200.41 radiation 1.0 14400 > th dose independent rect. 4 2
30 200.60 radiation 1.0 14400 < th dose independent rect. 3 3
32 200.62 wind 5.0 43200 < th dose dependent rect. 3 1
33 200.63 radiation 1.0 14400 < th dose independent rect. 24 6
37 200.65 radiation 1.0 14400 < th dose independent rect. 20 10
59 201.45 wind 1.0 43200 > th dose dependent rect. 3 1
72 202.03 wind 3.0 43200 > th dose dependent rect. 8 5
73 202.07 wind 3.0 43200 > th dose dependent rect. 10 2
86 202.78 wind 3.0 43200 > th dose dependent rect. 3 10
88 202.88 wind 3.0 43200 > th dose dependent rect. 5 8
93 203.16 radiation 1.0 4320 < th dose independent rect. 18 2
97 203.27 radiation 1.0 4320 < th dose independent rect. 18 7
99 203.32 radiation 1.0 4320 > th dose independent rect. 18 1
124 203.68 wind 3.0 43200 > th dose dependent rect. 24 13
125 203.79 wind 5.0 43200 < th dose independent rect. 20 18
127 203.84 wind 5.0 43200 < th dose independent sin 5 NA
140 204.17 wind 5.0 43200 > th dose independent sin 5 NA
146 204.34 wind 5.0 43200 > th dose independent rect. 20 18
152 204.55 temperature 20.0 43200 > th dose independent rect. 19 1
153 204.60 radiation 10.0 14400 < th dose dependent rect. 17 12
156 204.67 radiation 10.0 14400 < th dose dependent rect. 17 8
157 204.68 radiation 10.0 14400 < th dose dependent rect. 17 3
166 204.76 radiation 40.0 14400 < th dose dependent rect. 17 11
168 204.77 radiation 40.0 14400 < th dose dependent rect. 17 3
176 204.80 radiation 40.0 14400 < th dose dependent rect. 17 8
192 204.86 radiation 1.0 14400 > th dose dependent rect. 17 12
205 204.90 wind 3.0 43200 > th dose dependent rect. 20 17
213 204.95 radiation 1.0 14400 > th dose dependent rect. 17 2
240 205.30 humidity 90.0 43200 > th dose dependent rect. 15 7
254 205.38 radiation 30.0 14400 > th dose dependent rect. 15 17
255 205.39 precipitation 0.1 43200 > th dose independent rect. 19 2
256 205.39 precipitation 0.1 43200 < th dose independent rect. 19 2
257 205.39 precipitation 0.1 43200 < th dose dependent rect. 19 2
272 205.46 wind 7.0 43200 < th dose dependent rect. 8 4
303 205.59 humidity 90.0 43200 > th dose dependent rect. 18 1
317 205.70 radiation 30.0 14400 < th dose independent rect. 15 17
318 205.73 wind 3.0 43200 > th dose independent rect. 3 1
321 205.79 wind 3.0 43200 < th dose independent rect. 3 1
323 205.80 humidity 90.0 43200 > th dose dependent rect. 12 10
368 206.19 radiation 10.0 14400 < th dose dependent sin 16 NA
386 206.45 radiation 20.0 14400 > th dose dependent rect. 16 15
390 206.49 wind 5.0 43200 < th dose independent rect. 5 1
411 206.76 wind 3.0 43200 > th dose dependent sin 6 NA
412 206.77 wind 7.0 43200 < th dose dependent rect. 8 1
424 206.94 radiation 30.0 14400 > th dose dependent rect. 15 1
465 207.02 temperature 25.0 43200 < th dose dependent rect. 17 1
505 207.20 temperature 20.0 43200 < th dose independent rect. 19 1
533 207.26 radiation 1.0 14400 > th dose independent sin 11 NA
550 207.32 radiation 30.0 14400 < th dose independent rect. 15 3
558 207.33 radiation 30.0 14400 < th dose independent rect. 15 10
560 207.33 radiation 30.0 14400 < th dose independent rect. 15 13
577 207.37 humidity 90.0 43200 > th dose independent rect. 12 10
580 207.38 temperature 25.0 43200 < th dose dependent rect. 9 9
589 207.42 radiation 1.0 14400 < th dose independent sin 11 NA
594 207.43 temperature 25.0 43200 < th dose dependent rect. 9 2
603 207.48 wind 7.0 43200 < th dose dependent rect. 10 1
630 207.58 radiation 40.0 4320 > th dose dependent rect. 13 20
631 207.59 radiation 30.0 14400 > th dose independent rect. 7 1
649 207.60 humidity 90.0 43200 < th dose independent rect. 17 2
675 207.65 temperature 25.0 43200 < th dose dependent rect. 9 6
715 207.74 wind 5.0 43200 > th dose independent rect. 5 1
735 207.82 humidity 90.0 43200 > th dose independent rect. 17 2
739 207.83 wind 3.0 43200 > th dose dependent rect. 5 1
749 207.86 precipitation 0.1 43200 < th dose independent rect. 16 6
752 207.86 precipitation 0.1 43200 < th dose dependent rect. 16 6
764 207.89 precipitation 0.1 43200 > th dose independent rect. 16 6
770 207.90 radiation 1.0 14400 < th dose independent rect. 16 18
812 208.03 radiation 1.0 14400 > th dose independent rect. 16 18
825 208.08 humidity 90.0 43200 < th dose independent rect. 12 10
843 208.12 radiation 10.0 14400 < th dose independent rect. 16 3
845 208.12 radiation 10.0 14400 < th dose independent rect. 16 9
849 208.12 temperature 25.0 43200 < th dose dependent rect. 13 1
867 208.14 radiation 40.0 4320 > th dose dependent rect. 13 2
881 208.16 wind 7.0 43200 < th dose dependent rect. 2 10
897 208.22 humidity 90.0 43200 > th dose independent rect. 15 7
919 208.24 humidity 90.0 43200 > th dose independent rect. 9 13