Os01g0698300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, BED-type predicted domain containing protein.
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Os01g0698300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, BED-type predicted domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.28 | 0.241 | 9.54 | 0.879 | 0.657 | 0.604 | -0.22 | -0.735 | 0.298 | 3.33 | 70.94 | 967 | -- | -- |
| 27.12 | 0.243 | 9.54 | 0.812 | 0.654 | 0.59 | -0.0994 | -- | 0.288 | 3.39 | 71.93 | 975 | -- | -- |
| 26.42 | 0.239 | 9.54 | 0.873 | 0.657 | 0.602 | -- | -0.665 | 0.298 | 3.34 | 71.06 | 972 | -- | -- |
| 27.14 | 0.243 | 9.54 | 0.811 | 0.66 | 0.591 | -- | -- | 0.286 | 3.41 | 71.98 | 988 | -- | -- |
| 29.73 | 0.254 | 9.54 | 0.83 | -- | 0.672 | -- | -0.607 | 0.298 | -- | 71.71 | 273 | -- | -- |
| 31.94 | 0.265 | 9.55 | 0.826 | 0.622 | -- | -0.182 | -- | 0.228 | 4.64 | -- | -- | -- | -- |
| 32.03 | 0.265 | 9.55 | 0.827 | 0.62 | -- | -- | -- | 0.229 | 4.62 | -- | -- | -- | -- |
| 30.74 | 0.258 | 9.54 | 0.798 | -- | 0.654 | -- | -- | 0.292 | -- | 71.8 | 268 | -- | -- |
| 43.41 | 0.307 | 9.56 | -- | 0.674 | 0.635 | -- | -- | 0.219 | 3.39 | 81.29 | 958 | -- | -- |
| 52.5 | 0.339 | 9.55 | 0.85 | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
| 50.03 | 0.331 | 9.57 | -- | 0.636 | -- | -- | -- | 0.137 | 4.58 | -- | -- | -- | -- |
| 47.16 | 0.32 | 9.56 | -- | -- | 0.696 | -- | -- | 0.222 | -- | 77.49 | 284 | -- | -- |
| 71.57 | 0.395 | 9.57 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 2 | 25.04 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 3 | 25.13 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 8 | 25.32 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 19 | 25.61 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 59 | 26.20 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 63 | 26.22 | humidity | 90 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 91 | 26.43 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 101 | 26.49 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 21 |
| 102 | 26.50 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 103 | 26.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 17 |
| 116 | 26.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 135 | 26.58 | humidity | 90 | 720 | > th | dose dependent | sin | 20 | NA |
| 152 | 26.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 156 | 26.64 | humidity | 90 | 720 | > th | dose independent | rect. | 7 | 17 |
| 159 | 26.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 162 | 26.65 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 18 |
| 184 | 26.68 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 194 | 26.69 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 225 | 26.72 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 229 | 26.73 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 230 | 26.75 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 234 | 26.75 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 257 | 26.79 | humidity | 90 | 720 | > th | dose independent | rect. | 5 | 19 |
| 261 | 26.80 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 291 | 26.84 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 17 |
| 294 | 26.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 296 | 26.84 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 315 | 26.87 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 434 | 26.94 | humidity | 70 | 1440 | > th | dose dependent | sin | 23 | NA |
| 460 | 26.96 | humidity | 90 | 720 | > th | dose independent | rect. | 21 | 1 |
| 475 | 26.97 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 477 | 26.97 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 21 |
| 546 | 27.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 548 | 27.01 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 553 | 27.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 560 | 27.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 566 | 27.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 570 | 27.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 574 | 27.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 575 | 27.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 684 | 27.06 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 711 | 27.07 | humidity | 70 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 716 | 27.08 | humidity | 70 | 1440 | > th | dose dependent | rect. | 1 | 17 |
| 721 | 27.09 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 725 | 27.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 839 | 27.16 | radiation | 1 | 1440 | > th | dose independent | sin | 18 | NA |
| 841 | 27.16 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 865 | 27.16 | radiation | 10 | 1440 | < th | dose dependent | sin | 17 | NA |
| 982 | 27.21 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |