Os01g0696800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os01g0696800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.97 | 0.596 | 10.2 | -3.56 | 1.7 | 1.45 | 1.6 | -1.13 | -0.486 | 7.21 | 14.4 | 3435 | -- | -- |
| 162.73 | 0.594 | 10.2 | -3.4 | 1.64 | 1.48 | 1.63 | -- | -0.447 | 7.18 | 10.96 | 5662 | -- | -- |
| 167.77 | 0.603 | 10.3 | -3.53 | 1.71 | 1.45 | -- | -1.19 | -0.491 | 7.2 | 12.41 | 3450 | -- | -- |
| 169.79 | 0.607 | 10.2 | -3.36 | 1.64 | 1.48 | -- | -- | -0.45 | 7.16 | 8.789 | 5679 | -- | -- |
| 312.78 | 0.824 | 10.3 | -3.51 | -- | 1.49 | -- | -0.516 | -0.54 | -- | 5.719 | 7132 | -- | -- |
| 199.74 | 0.663 | 10.1 | -2.69 | 1.66 | -- | 1.59 | -- | -0.131 | 7.05 | -- | -- | -- | -- |
| 206.36 | 0.673 | 10.1 | -2.66 | 1.67 | -- | -- | -- | -0.135 | 7.03 | -- | -- | -- | -- |
| 312.55 | 0.823 | 10.3 | -3.37 | -- | 1.55 | -- | -- | -0.439 | -- | 9.007 | 5708 | -- | -- |
| 310.65 | 0.821 | 9.98 | -- | 1.66 | -1.42 | -- | -- | 0.608 | 7 | 14.8 | 47520 | -- | -- |
| 352.89 | 0.878 | 10.2 | -2.62 | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
| 392.5 | 0.927 | 10.1 | -- | 1.64 | -- | -- | -- | 0.161 | 7.14 | -- | -- | -- | -- |
| 393.58 | 0.924 | 9.95 | -- | -- | -1.47 | -- | -- | 0.383 | -- | 35.42 | 47378 | -- | -- |
| 534.55 | 1.08 | 10.1 | -- | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.68 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 6 | 154.43 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 7 | 154.51 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 19 | 155.67 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 20 | 155.69 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 35 | 156.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 37 | 156.29 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 45 | 156.50 | radiation | 40 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 47 | 156.54 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 48 | 156.58 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 57 | 156.85 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 59 | 156.89 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 63 | 156.95 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 64 | 156.95 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 66 | 157.00 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 72 | 157.04 | radiation | 30 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 79 | 157.08 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 89 | 157.15 | radiation | 30 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 98 | 157.19 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 102 | 157.21 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 108 | 157.24 | radiation | 30 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 119 | 157.31 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |
| 120 | 157.31 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 11 |
| 132 | 157.38 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 136 | 157.40 | wind | 3 | 43200 | > th | dose dependent | sin | 5 | NA |
| 138 | 157.40 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 11 |
| 143 | 157.42 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 160 | 157.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 176 | 157.52 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 177 | 157.52 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 197 | 157.60 | wind | 1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 198 | 157.60 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 206 | 157.61 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 5 |
| 213 | 157.63 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 224 | 157.67 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 242 | 157.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 7 |
| 247 | 157.68 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 261 | 157.72 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 262 | 157.72 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 316 | 157.89 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 331 | 157.92 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 341 | 157.95 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 8 |
| 454 | 158.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 17 |
| 469 | 158.31 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 494 | 158.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 516 | 158.41 | wind | 9 | 43200 | < th | dose dependent | sin | 6 | NA |
| 634 | 158.66 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 647 | 158.67 | radiation | 40 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 653 | 158.70 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 655 | 158.70 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 712 | 158.87 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 721 | 158.89 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 737 | 158.91 | wind | 5 | 43200 | < th | dose independent | sin | 11 | NA |
| 776 | 158.97 | wind | 5 | 43200 | > th | dose independent | sin | 11 | NA |
| 778 | 158.97 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 816 | 159.07 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 825 | 159.09 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 857 | 159.15 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 870 | 159.17 | radiation | 40 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 871 | 159.18 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 884 | 159.20 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 950 | 159.32 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 3 |