Os01g0694000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0694000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.83 | 0.728 | 8.51 | 2.39 | 1.1 | 4.95 | -0.755 | 8.24 | 0.242 | 14 | 1.238 | 11581 | -- | -- |
| 342.5 | 0.862 | 8.73 | 1.63 | 0.323 | 4.85 | -1.38 | -- | -0.237 | 14.2 | 2.063 | 10344 | -- | -- |
| 234.44 | 0.713 | 8.5 | 2.22 | 1.06 | 4.92 | -- | 8.2 | 0.191 | 13.6 | 1.276 | 13046 | -- | -- |
| 328.1 | 0.844 | 8.73 | 1.08 | 0.583 | 4.38 | -- | -- | -0.232 | 12.9 | 2.085 | 10316 | -- | -- |
| 262.38 | 0.754 | 8.56 | 2.11 | -- | 5.41 | -- | 8.16 | 0.0856 | -- | 1.222 | 13253 | -- | -- |
| 666.12 | 1.21 | 8.47 | 1.65 | 1.11 | -- | -0.614 | -- | 0.917 | 13.7 | -- | -- | -- | -- |
| 667.47 | 1.21 | 8.47 | 1.63 | 1.11 | -- | -- | -- | 0.912 | 13.5 | -- | -- | -- | -- |
| 315.28 | 0.827 | 8.79 | 0.825 | -- | 5.04 | -- | -- | -0.355 | -- | 1.782 | 13350 | -- | -- |
| 318.57 | 0.831 | 8.52 | -- | 0.472 | 4.49 | -- | -- | -0.121 | 12.7 | 1.492 | 13319 | -- | -- |
| 742.52 | 1.27 | 8.49 | 1.58 | -- | -- | -- | -- | 0.889 | -- | -- | -- | -- | -- |
| 737.34 | 1.27 | 8.51 | -- | 1.08 | -- | -- | -- | 0.731 | 13.4 | -- | -- | -- | -- |
| 304.5 | 0.813 | 8.8 | -- | -- | 4.86 | -- | -- | -0.501 | -- | 1.798 | 13320 | -- | -- |
| 808.71 | 1.33 | 8.53 | -- | -- | -- | -- | -- | 0.713 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.66 | temperature | 25 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 7 | 230.73 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 10 |
| 9 | 230.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 11 | 231.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 31 | 232.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 37 | 232.49 | temperature | 15 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 44 | 232.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 11 |
| 45 | 232.83 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 56 | 232.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 70 | 233.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 22 |
| 75 | 233.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 88 | 233.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 107 | 233.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 120 | 233.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 12 |
| 141 | 233.86 | radiation | 1 | 43200 | > th | dose independent | sin | 17 | NA |
| 146 | 233.92 | humidity | 90 | 43200 | < th | dose independent | sin | 19 | NA |
| 209 | 234.73 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 22 |
| 212 | 234.79 | radiation | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 224 | 234.87 | humidity | 90 | 43200 | > th | dose independent | sin | 19 | NA |
| 239 | 234.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 252 | 235.01 | temperature | 25 | 43200 | < th | dose dependent | sin | 20 | NA |
| 381 | 235.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 10 |
| 385 | 235.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 396 | 235.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 397 | 235.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 13 | 8 |
| 399 | 235.90 | radiation | 1 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 404 | 235.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 407 | 235.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 408 | 235.94 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 409 | 235.94 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 468 | 235.96 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 491 | 236.08 | humidity | 90 | 43200 | > th | dose dependent | sin | 19 | NA |
| 495 | 236.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 524 | 236.28 | radiation | 1 | 14400 | > th | dose independent | sin | 13 | NA |
| 526 | 236.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 536 | 236.35 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 540 | 236.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 18 |
| 541 | 236.38 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 549 | 236.39 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 551 | 236.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 561 | 236.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 562 | 236.42 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 570 | 236.42 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 572 | 236.42 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 580 | 236.43 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 586 | 236.45 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 625 | 236.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 769 | 237.17 | radiation | 1 | 43200 | < th | dose dependent | sin | 17 | NA |
| 772 | 237.20 | radiation | 1 | 14400 | < th | dose independent | sin | 1 | NA |
| 787 | 237.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 789 | 237.25 | radiation | 1 | 14400 | > th | dose independent | sin | 0 | NA |
| 800 | 237.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 804 | 237.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 831 | 237.40 | humidity | 80 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 839 | 237.44 | radiation | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 967 | 238.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 989 | 238.29 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 10 |